Non-Coding RNA Search

unkn-MI-P-AY0-neu-a-02-0-UI.s1

Sequence:


               
               TTTTTTTTTTTTTTTTTCCGGGGACAGTGTACTTTATTGATGGTACATGACGAGGCAGGT
CTCACTAAGCCCCTCCCCTTCTTCCGGGGGTCTGGGATGGAAACTGGAAGTCAGGAGATG
CTCGGTGTGTTGGGGGATCGAGTTGGGGCTGTGACTCCCCAGCAGCTGAGGGCCTCTCTC
CTCCTCGCGTGCTCTTGCTGGGGTTGGTGGTCCAGGGGCTCTTACTCCTTGGAGGCCATG
TGGACCATGAGGTCCACCACCCTGTTGCTGTAGCCAAATTCATTGTCGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTCCGGGGACAGTGTACTTTATTGATGGTACATGACGAGGCAGGT
CTCACTAAGCCCCTCCCCTTCTTCCGGGGGTCTGGGATGGAAACTGGAAGTCAGGAGATG
CTCGGTGTGTTGGGGGATCGAGTTGGGGCTGTGACTCCCCAGCAGCTGAGGGCCTCTCTC
CTCCTCGCGTGCTCTTGCTGGGGTTGGTGGTCCAGGGGCTCTTACTCCTTGGAGGCCATG
TGGACCATGAGGTCCACCACCCTGTTGCTGTAGCCAAATTCATTGTCGTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1177672|emb|CAA63935.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1177672|emb|CAA63935.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               94-202, + strand, RNAz p=0.978901
               

               
               152-271, + strand, RNAz p=0.99129

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               94-202, + strand, RNAz p=0.978901
               

               
               152-271, + strand, RNAz p=0.99129

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-291, gnl|bosTau2|chr11 (30089822-30090115)
               

               
               2-291, gnl|canFam2|chr15 (13883629-13883442)
               

               
               2-291, gnl|dasNov1|scaffold_246401 (1473-1292)
               

               
               2-291, gnl|echTel1|scaffold_316571 (80672-80846)
               

               
               2-291, gnl|hg17|chr13 (44595928-44596115)
               

               
               2-291, gnl|Hg17|chr2 (38425401-38425140)
               

               
               2-291, gnl|loxAfr1|scaffold_43822 (28161-28341)
               

               
               2-291, gnl|Mm7|chr11 (63393659-63393945)
               

               
               2-291, gnl|mm7|chr12 (67861245-67861431)
               

               
               2-291, gnl|monDom2|scaffold_2 (66500956-66501138)
               

               
               2-291, gnl|oryCun1|scaffold_34241 (1549-1739)
               

               
               2-291, gnl|panTro1|chr14 (44317874-44318060)
               

               
               2-291, gnl|rheMac2|chr17 (24039061-24039239)
               

               
               2-291, gnl|rn3|chr16 (25752410-25752228)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-291, gnl|bosTau2|chr11 (30089822-30090115)
               

               
               2-291, gnl|canFam2|chr15 (13883629-13883442)
               

               
               2-291, gnl|dasNov1|scaffold_246401 (1473-1292)
               

               
               2-291, gnl|echTel1|scaffold_316571 (80672-80846)
               

               
               2-291, gnl|hg17|chr13 (44595928-44596115)
               

               
               2-291, gnl|Hg17|chr2 (38425401-38425140)
               

               
               2-291, gnl|loxAfr1|scaffold_43822 (28161-28341)
               

               
               2-291, gnl|Mm7|chr11 (63393659-63393945)
               

               
               2-291, gnl|mm7|chr12 (67861245-67861431)
               

               
               2-291, gnl|monDom2|scaffold_2 (66500956-66501138)
               

               
               2-291, gnl|oryCun1|scaffold_34241 (1549-1739)
               

               
               2-291, gnl|panTro1|chr14 (44317874-44318060)
               

               
               2-291, gnl|rheMac2|chr17 (24039061-24039239)
               

               
               2-291, gnl|rn3|chr16 (25752410-25752228)

	94-202, + strand, RNAz p=0.978901
	152-271, + strand, RNAz p=0.99129

	2-291, gnl\|bosTau2\|chr11 (30089822-30090115)
	2-291, gnl\|canFam2\|chr15 (13883629-13883442)
	2-291, gnl\|dasNov1\|scaffold_246401 (1473-1292)
	2-291, gnl\|echTel1\|scaffold_316571 (80672-80846)
	2-291, gnl\|hg17\|chr13 (44595928-44596115)
	2-291, gnl\|Hg17\|chr2 (38425401-38425140)
	2-291, gnl\|loxAfr1\|scaffold_43822 (28161-28341)
	2-291, gnl\|Mm7\|chr11 (63393659-63393945)
	2-291, gnl\|mm7\|chr12 (67861245-67861431)
	2-291, gnl\|monDom2\|scaffold_2 (66500956-66501138)
	2-291, gnl\|oryCun1\|scaffold_34241 (1549-1739)
	2-291, gnl\|panTro1\|chr14 (44317874-44318060)
	2-291, gnl\|rheMac2\|chr17 (24039061-24039239)
	2-291, gnl\|rn3\|chr16 (25752410-25752228)