Non-Coding RNA Search

unkn-PS24U-208

Sequence:


               
               ACTGGCAGAGCTGTGGCTCGAATTCCCAGGGTTCGAGGTGGTGGGACTCACCGTTCTGGC
CAGGGTGCTTTTGGAAATATGTGTCGTGGGGGCCGCATGTTTGCGCCAACCAAGACCTGG
CGACGTTGGCATCGCAGAGTGAACACAACACAGAAGCGATATGCCATCTGCTCTGCACTG
GCTGCCTCAGCCTTACCAGCGCTGGTCATGTCTAAAGGTCATCGGATTGAGGAAGTTCCT
GAACTTCCTTTGGTGGTTGAAGATAAAGTTGAAAGCTACAAAAAAACCAAGGAGGCTGTT
CTGCTTCTGAAGAAGCTTAAGGCCTGGAATGATATCAAGAAAGGTTTATGCCTCTCAGCG
AATGAGAGCTTGGTAAAGGCAAAATGAGAAACCGTCGCCGAATCCAGCGCAGGGGACCCT
TGCATCATCTATAATGAGGACAATGGTATCATCAAAGCCTTCAGAAACATCCCTGGAATA
CTCTGCTTAACGTAAGCAAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGGCAGAGCTGTGGCTCGAATTCCCAGGGTTCGAGGTGGTGGGACTCACCGTTCTGGC
CAGGGTGCTTTTGGAAATATGTGTCGTGGGGGCCGCATGTTTGCGCCAACCAAGACCTGG
CGACGTTGGCATCGCAGAGTGAACACAACACAGAAGCGATATGCCATCTGCTCTGCACTG
GCTGCCTCAGCCTTACCAGCGCTGGTCATGTCTAAAGGTCATCGGATTGAGGAAGTTCCT
GAACTTCCTTTGGTGGTTGAAGATAAAGTTGAAAGCTACAAAAAAACCAAGGAGGCTGTT
CTGCTTCTGAAGAAGCTTAAGGCCTGGAATGATATCAAGAAAGGTTTATGCCTCTCAGCG
AATGAGAGCTTGGTAAAGGCAAAATGAGAAACCGTCGCCGAATCCAGCGCAGGGGACCCT
TGCATCATCTATAATGAGGACAATGGTATCATCAAAGCCTTCAGAAACATCCCTGGAATA
CTCTGCTTAACGTAAGCAAGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55642305|ref|XP_510494.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55642305|ref|XP_510494.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               281-400, + strand, RNAz p=0.533213

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-400, + strand, RNAz p=0.533213

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-479, gnl|bosTau2|chr15 (50588601-50588126)
               

               
               1-479, gnl|Hg17|chr3 (186619064-186618580)
               

               
               1-479, gnl|Mm7|chr1 (143020678-143020194)
               


               
               155-366, gnl|bosTau2|chr11 (62719027-62719234)
               

               
               155-366, gnl|Hg17|chr15 (64582066-64581161)
               

               
               155-366, gnl|Mm7|chr1 (143020543-143020314)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-479, gnl|bosTau2|chr15 (50588601-50588126)
               

               
               1-479, gnl|Hg17|chr3 (186619064-186618580)
               

               
               1-479, gnl|Mm7|chr1 (143020678-143020194)
               


               
               155-366, gnl|bosTau2|chr11 (62719027-62719234)
               

               
               155-366, gnl|Hg17|chr15 (64582066-64581161)
               

               
               155-366, gnl|Mm7|chr1 (143020543-143020314)

	1-479, gnl\|bosTau2\|chr15 (50588601-50588126)
	1-479, gnl\|Hg17\|chr3 (186619064-186618580)
	1-479, gnl\|Mm7\|chr1 (143020678-143020194)

	155-366, gnl\|bosTau2\|chr11 (62719027-62719234)
	155-366, gnl\|Hg17\|chr15 (64582066-64581161)
	155-366, gnl\|Mm7\|chr1 (143020543-143020314)