Non-Coding RNA Search

unkn-RN082401LPS007D04T

Sequence:


               
               CGGCAACATAGGAGGAGGGAAAAGGCAGCCAGAGACAGTCCCAGCGCCCCTTTCGGAGGT
TGAAGGGCCCTAGCTTTCGTGGGGGTCATGGCATCGCTGGCGGACCGAGTGCGAGGCAAC
GGGCGCATCGCTGCCGGACTCCTGCTCAACCTGCTGGTGTCCATCTGCATCGTGTTCCTC
AACAAATGGATCTATGTGCACCACGGCTTCCCCAACATGAGCCTGACCCTGGTGCACTTC
GTGGTCACTTGGCTGGGCTTGTATGCCTGCCAGAAGCTGGACATCTTTGCCCCCAAAAGT
CTGCCGCCTTCCAAGCTCCTCCTCCTGGCGCTCAGCTTCTGTGGCTTCGTGGTCTTCACC
AATTTATCTCTGCAGAACAACACCATAGGCACCTATCAGCTGGCTAAGGCCATGACCACA
CCGGTGATCATAGTCATCCAGACCCTCTTCTACAAGAAAACCTTCTCTGTCAAAATACAG
CTCACGCTGATTCCTATAACTTAAGGGGTAACCTAAAATCTTATTACCAAGGGAAGGTAA
ATTCCCTGGAAAGGGGTTGGCGGTTCTGGGGTTAAATAACATCCTTTATTAAAGGTGGGG
TGGAAGCCAACCCCTTGAATGGCAGGTAATTCATTGGGTTGGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCAACATAGGAGGAGGGAAAAGGCAGCCAGAGACAGTCCCAGCGCCCCTTTCGGAGGT
TGAAGGGCCCTAGCTTTCGTGGGGGTCATGGCATCGCTGGCGGACCGAGTGCGAGGCAAC
GGGCGCATCGCTGCCGGACTCCTGCTCAACCTGCTGGTGTCCATCTGCATCGTGTTCCTC
AACAAATGGATCTATGTGCACCACGGCTTCCCCAACATGAGCCTGACCCTGGTGCACTTC
GTGGTCACTTGGCTGGGCTTGTATGCCTGCCAGAAGCTGGACATCTTTGCCCCCAAAAGT
CTGCCGCCTTCCAAGCTCCTCCTCCTGGCGCTCAGCTTCTGTGGCTTCGTGGTCTTCACC
AATTTATCTCTGCAGAACAACACCATAGGCACCTATCAGCTGGCTAAGGCCATGACCACA
CCGGTGATCATAGTCATCCAGACCCTCTTCTACAAGAAAACCTTCTCTGTCAAAATACAG
CTCACGCTGATTCCTATAACTTAAGGGGTAACCTAAAATCTTATTACCAAGGGAAGGTAA
ATTCCCTGGAAAGGGGTTGGCGGTTCTGGGGTTAAATAACATCCTTTATTAAAGGTGGGG
TGGAAGCCAACCCCTTGAATGGCAGGTAATTCATTGGGTTGGTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61839445|ref|XP_585883.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839445|ref|XP_585883.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               268-489, - strand, RNAz p=0.879001

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-489, - strand, RNAz p=0.879001

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-489, gnl|bosTau2|chr5 (28476447-28475970)
               

               
               11-489, gnl|Hg17|chr12 (67426356-67426826)
               

               
               11-489, gnl|Mm7|chr10 (117257652-117257156)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-489, gnl|bosTau2|chr5 (28476447-28475970)
               

               
               11-489, gnl|Hg17|chr12 (67426356-67426826)
               

               
               11-489, gnl|Mm7|chr10 (117257652-117257156)

	11-489, gnl\|bosTau2\|chr5 (28476447-28475970)
	11-489, gnl\|Hg17\|chr12 (67426356-67426826)
	11-489, gnl\|Mm7\|chr10 (117257652-117257156)