Non-Coding RNA Search

unkn-SGD602702227.R1

Sequence:


               
               TTTTTTTCACTGTTTAAGGAATTTTTATTAAAGCAAGAATTTTATAATCCAAATTACGTT
TCCTTGCTCAGTTATCAATTCTGTTATTTAAAACAGAAGTGACATTCTGAGCTATTCCAC
AGTAAAGAATTACAAAATTAAAGAAAGGAATGCTTTAAATTTTTGTACTTTGCTGAAAAT
TCTTTTTCCCACGGTCTATAAAACATTAATTTGTTTTTATATTTTACTATTTTTTTGTGT
TTTTTGTTGTTTTTAAATCAATAAGTAATCTAGGACTAGCATTATGTTTGCTAGACCTGG
CATTTGCTCGGTACATAAGGTTCAAAGTTTCCTTTCCTTTTTTTATTTATTTTCTATTTT
GCAATGTTTTTTTTTCCATAGTATTTAAGTTTTTCGATGTTTAGGTATTTTTCTTCGGTG
AAGCACGAGTTTCTTTTCATGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTCACTGTTTAAGGAATTTTTATTAAAGCAAGAATTTTATAATCCAAATTACGTT
TCCTTGCTCAGTTATCAATTCTGTTATTTAAAACAGAAGTGACATTCTGAGCTATTCCAC
AGTAAAGAATTACAAAATTAAAGAAAGGAATGCTTTAAATTTTTGTACTTTGCTGAAAAT
TCTTTTTCCCACGGTCTATAAAACATTAATTTGTTTTTATATTTTACTATTTTTTTGTGT
TTTTTGTTGTTTTTAAATCAATAAGTAATCTAGGACTAGCATTATGTTTGCTAGACCTGG
CATTTGCTCGGTACATAAGGTTCAAAGTTTCCTTTCCTTTTTTTATTTATTTTCTATTTT
GCAATGTTTTTTTTTCCATAGTATTTAAGTTTTTCGATGTTTAGGTATTTTTCTTCGGTG
AAGCACGAGTTTCTTTTCATGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               38-155, - strand, RNAz p=0.960131

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-155, - strand, RNAz p=0.960131

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               38-155, LB0182.CR_P22 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|DV906249.1|), 
blast E-value=0, identity=100% 
               

               
               38-155, LB01812.CR_B10 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE221391.1|), 
blast E-value=0, identity=100% 
               

               
               38-155, LB02222.CR_K09 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE241375.1|), 
blast E-value=0, identity=100% 
               

               
               38-155, LB02319.CR_B04 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb|EE247573.1|), 
blast E-value=0, identity=100% 
               

               
               38-155, LB02985.CR_D22 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE366412.1|), 
blast E-value=0, identity=100% 
               

               
               38-155, LB029106.CR_A06 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE367972.1|), 
blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               38-155, LB0182.CR_P22 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|DV906249.1|), 
blast E-value=0, identity=100% 
               

               
               38-155, LB01812.CR_B10 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE221391.1|), 
blast E-value=0, identity=100% 
               

               
               38-155, LB02222.CR_K09 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE241375.1|), 
blast E-value=0, identity=100% 
               

               
               38-155, LB02319.CR_B04 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb|EE247573.1|), 
blast E-value=0, identity=100% 
               

               
               38-155, LB02985.CR_D22 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE366412.1|), 
blast E-value=0, identity=100% 
               

               
               38-155, LB029106.CR_A06 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE367972.1|), 
blast E-value=0, identity=100%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of Y00345, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of Y00345, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               38-244, gnl|bosTau2|chr19 (49581573-49581365)
               

               
               38-244, gnl|Hg17|chr8 (101784350-101784561)
               

               
               38-244, gnl|Mm7|chr3 (59561912-59561701)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-244, gnl|bosTau2|chr19 (49581573-49581365)
               

               
               38-244, gnl|Hg17|chr8 (101784350-101784561)
               

               
               38-244, gnl|Mm7|chr3 (59561912-59561701)

	38-155, LB0182.CR_P22 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb\|DV906249.1\|), blast E-value=0, identity=100%
	38-155, LB01812.CR_B10 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb\|EE221391.1\|), blast E-value=0, identity=100%
	38-155, LB02222.CR_K09 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb\|EE241375.1\|), blast E-value=0, identity=100%
	38-155, LB02319.CR_B04 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb\|EE247573.1\|), blast E-value=0, identity=100%
	38-155, LB02985.CR_D22 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE366412.1\|), blast E-value=0, identity=100%
	38-155, LB029106.CR_A06 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE367972.1\|), blast E-value=0, identity=100%

	38-244, gnl\|bosTau2\|chr19 (49581573-49581365)
	38-244, gnl\|Hg17\|chr8 (101784350-101784561)
	38-244, gnl\|Mm7\|chr3 (59561912-59561701)