Non-Coding RNA Search

unkn-SGD602702266.R1

Sequence:


               
               TTTTTTTGTGCTTATCTTTTTATTGTTTCTGTGGCAGAGCCCCTGCAGCGGGGAAGGGGC
AGGCACGGGGAGGTGGGCCCCCCTACCACCTGCCTGAGACCGCTCTCTCCTCTCTCCTCT
TCGCTCCAGCATCTCGCCCACCCTCTCTCTTTCTGCATCTCCTGCTCCCACATCTGGCAC
CTTCGGGGGTTCTCTCTTGCAGCCCCTGCTTTGTAAGCCCACCTTGGGAAAGTAAGGGAC
CATGGGGTCAGTCTCAAGCCCCCCAGTAACCACAGGGGGGCTATGTCCCCAGTTACCTGC
CTGGCTTGCTGAGGATGCTGCCTTTCTGACTCAGGCCGGGGCGGGGGCAGTGGGGAGGTC
CACAGGGCTTGACCTGACCCTGAGGGGTTCCTACATCCTACTCTGGAGTCCCCTCCAAAG
CCATATGCTAGAGCCTGAGGTCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTGTGCTTATCTTTTTATTGTTTCTGTGGCAGAGCCCCTGCAGCGGGGAAGGGGC
AGGCACGGGGAGGTGGGCCCCCCTACCACCTGCCTGAGACCGCTCTCTCCTCTCTCCTCT
TCGCTCCAGCATCTCGCCCACCCTCTCTCTTTCTGCATCTCCTGCTCCCACATCTGGCAC
CTTCGGGGGTTCTCTCTTGCAGCCCCTGCTTTGTAAGCCCACCTTGGGAAAGTAAGGGAC
CATGGGGTCAGTCTCAAGCCCCCCAGTAACCACAGGGGGGCTATGTCCCCAGTTACCTGC
CTGGCTTGCTGAGGATGCTGCCTTTCTGACTCAGGCCGGGGCGGGGGCAGTGGGGAGGTC
CACAGGGCTTGACCTGACCCTGAGGGGTTCCTACATCCTACTCTGGAGTCCCCTCCAAAG
CCATATGCTAGAGCCTGAGGTCACG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               44-157, + strand, RNAz p=0.992094
               

               
               198-445, - strand, RNAz p=0.999689

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-157, + strand, RNAz p=0.992094
               

               
               198-445, - strand, RNAz p=0.999689

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               355-426, + strand, RNAmicro p=0.99198

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               355-426, + strand, RNAmicro p=0.99198

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001927, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001927, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-445, gnl|bosTau2|chr2 (64437125-64437563)
               

               
               6-445, gnl|Hg17|chr2 (220116961-220116526)
               

               
               6-445, gnl|Mm7|chr1 (75593909-75593515)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-445, gnl|bosTau2|chr2 (64437125-64437563)
               

               
               6-445, gnl|Hg17|chr2 (220116961-220116526)
               

               
               6-445, gnl|Mm7|chr1 (75593909-75593515)

	44-157, + strand, RNAz p=0.992094
	198-445, - strand, RNAz p=0.999689

	6-445, gnl\|bosTau2\|chr2 (64437125-64437563)
	6-445, gnl\|Hg17\|chr2 (220116961-220116526)
	6-445, gnl\|Mm7\|chr1 (75593909-75593515)