Non-Coding RNA Search

unkn-SGD602702273.R1

Sequence:


               
               CAGGTTTCAGTTAACTTTTCAGTCTTCCCCTTCTTGTAGCAAAGCAAAACAATTTTGCTT
TTTTCCTTCCCCACACTTAGCAGTTTTAAGCATTGTAGAAACTTTTCAAGTAACAATTTA
ACATTAACAATGTACTATTAACTAGCATTTTCTTTGCCTTTGAGCTCTATTCCCCAGAGC
TCTGCCTACTGATCTTTTCTCCAGAGAATTCCCTTCAACCCTCGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTTTCAGTTAACTTTTCAGTCTTCCCCTTCTTGTAGCAAAGCAAAACAATTTTGCTT
TTTTCCTTCCCCACACTTAGCAGTTTTAAGCATTGTAGAAACTTTTCAAGTAACAATTTA
ACATTAACAATGTACTATTAACTAGCATTTTCTTTGCCTTTGAGCTCTATTCCCCAGAGC
TCTGCCTACTGATCTTTTCTCCAGAGAATTCCCTTCAACCCTCGAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-111, + strand, RNAz p=0.968036

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-111, + strand, RNAz p=0.968036

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-221, gnl|bosTau2|chr29 (38490983-38491203)
               

               
               1-221, gnl|canFam2|chr18 (54792417-54792164)
               

               
               1-221, gnl|dasNov1|scaffold_1974 (142438-142718)
               

               
               1-221, gnl|hg17|chr11 (64948975-64949253)
               

               
               1-221, gnl|Hg17|chr11 (64949417-64949086)
               

               
               1-221, gnl|loxAfr1|scaffold_9427 (4381-4646)
               

               
               1-221, gnl|mm7|chr19 (5738227-5738016)
               

               
               1-221, gnl|Mm7|chr19 (5737962-5738192)
               

               
               1-221, gnl|oryCun1|scaffold_153303 (8623-8352)
               

               
               1-221, gnl|rheMac2|chr14 (9006870-9006611)
               

               
               1-221, gnl|rn3|chr1 (208631318-208631118)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-221, gnl|bosTau2|chr29 (38490983-38491203)
               

               
               1-221, gnl|canFam2|chr18 (54792417-54792164)
               

               
               1-221, gnl|dasNov1|scaffold_1974 (142438-142718)
               

               
               1-221, gnl|hg17|chr11 (64948975-64949253)
               

               
               1-221, gnl|Hg17|chr11 (64949417-64949086)
               

               
               1-221, gnl|loxAfr1|scaffold_9427 (4381-4646)
               

               
               1-221, gnl|mm7|chr19 (5738227-5738016)
               

               
               1-221, gnl|Mm7|chr19 (5737962-5738192)
               

               
               1-221, gnl|oryCun1|scaffold_153303 (8623-8352)
               

               
               1-221, gnl|rheMac2|chr14 (9006870-9006611)
               

               
               1-221, gnl|rn3|chr1 (208631318-208631118)

	1-221, gnl\|bosTau2\|chr29 (38490983-38491203)
	1-221, gnl\|canFam2\|chr18 (54792417-54792164)
	1-221, gnl\|dasNov1\|scaffold_1974 (142438-142718)
	1-221, gnl\|hg17\|chr11 (64948975-64949253)
	1-221, gnl\|Hg17\|chr11 (64949417-64949086)
	1-221, gnl\|loxAfr1\|scaffold_9427 (4381-4646)
	1-221, gnl\|mm7\|chr19 (5738227-5738016)
	1-221, gnl\|Mm7\|chr19 (5737962-5738192)
	1-221, gnl\|oryCun1\|scaffold_153303 (8623-8352)
	1-221, gnl\|rheMac2\|chr14 (9006870-9006611)
	1-221, gnl\|rn3\|chr1 (208631318-208631118)