Non-Coding RNA Search

unkn-SGD602702277.R1

Sequence:


               
               TTTTTTTAAAGCAGGCACCAATGTATTTATTGGCAATGAACTAGACATTACATGAACCAA
ATGAAGATGTAAAAATGCATGAAGCATAATTGGTGCAACATTTAAAAGATCACAAAATAA
AAAGAAAATTCATTTTCAAAAGAAACATTGTATCCAAGGCGAGCCCTGAACACCAGAATA
CAACTGATAACATTGACTGTGAAGATCCAGAATAAAATTTAAACCAAACAACTGAAAGAA
AAAGTTTCTTTTCCCAACTTGAAGGCTCCCTGGCTACCACCTGTGTTTCATACACACCAG
ATAATTTTCATCACCAGACAGTAATCAGATGATATTTATCATATTCCTCATAAGAAAATA
CCTCTCCTACAAATAGAGAAATTTGAGGGAAATCCAAGCAACAAAACGGTCGGTGGCCCC
AACTGATTAGGTCAGCATTTTCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTAAAGCAGGCACCAATGTATTTATTGGCAATGAACTAGACATTACATGAACCAA
ATGAAGATGTAAAAATGCATGAAGCATAATTGGTGCAACATTTAAAAGATCACAAAATAA
AAAGAAAATTCATTTTCAAAAGAAACATTGTATCCAAGGCGAGCCCTGAACACCAGAATA
CAACTGATAACATTGACTGTGAAGATCCAGAATAAAATTTAAACCAAACAACTGAAAGAA
AAAGTTTCTTTTCCCAACTTGAAGGCTCCCTGGCTACCACCTGTGTTTCATACACACCAG
ATAATTTTCATCACCAGACAGTAATCAGATGATATTTATCATATTCCTCATAAGAAAATA
CCTCTCCTACAAATAGAGAAATTTGAGGGAAATCCAAGCAACAAAACGGTCGGTGGCCCC
AACTGATTAGGTCAGCATTTTCTAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               344-445, - strand, RNAz p=0.868278

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               344-445, - strand, RNAz p=0.868278

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               9-445, gnl|bosTau2|chr12 (27189060-27189496)
               

               
               9-445, gnl|canFam2|chr22 (32056420-32057147)
               

               
               9-445, gnl|echTel1|scaffold_313543 (1839-2566)
               

               
               9-445, gnl|hg17|chr13 (74756791-74757482)
               

               
               9-445, gnl|Hg17|chr13 (74756811-74757248)
               

               
               9-445, gnl|Mm7|chr14 (95854654-95855217)
               

               
               9-445, gnl|monDom2|scaffold_8 (12161052-12161793)
               

               
               9-445, gnl|panTro1|chr14 (57318824-57319514)
               

               
               9-445, gnl|rheMac2|chr17 (55729064-55729755)
               

               
               9-445, gnl|rn3|chr15 (85373119-85373839)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-445, gnl|bosTau2|chr12 (27189060-27189496)
               

               
               9-445, gnl|canFam2|chr22 (32056420-32057147)
               

               
               9-445, gnl|echTel1|scaffold_313543 (1839-2566)
               

               
               9-445, gnl|hg17|chr13 (74756791-74757482)
               

               
               9-445, gnl|Hg17|chr13 (74756811-74757248)
               

               
               9-445, gnl|Mm7|chr14 (95854654-95855217)
               

               
               9-445, gnl|monDom2|scaffold_8 (12161052-12161793)
               

               
               9-445, gnl|panTro1|chr14 (57318824-57319514)
               

               
               9-445, gnl|rheMac2|chr17 (55729064-55729755)
               

               
               9-445, gnl|rn3|chr15 (85373119-85373839)

	9-445, gnl\|bosTau2\|chr12 (27189060-27189496)
	9-445, gnl\|canFam2\|chr22 (32056420-32057147)
	9-445, gnl\|echTel1\|scaffold_313543 (1839-2566)
	9-445, gnl\|hg17\|chr13 (74756791-74757482)
	9-445, gnl\|Hg17\|chr13 (74756811-74757248)
	9-445, gnl\|Mm7\|chr14 (95854654-95855217)
	9-445, gnl\|monDom2\|scaffold_8 (12161052-12161793)
	9-445, gnl\|panTro1\|chr14 (57318824-57319514)
	9-445, gnl\|rheMac2\|chr17 (55729064-55729755)
	9-445, gnl\|rn3\|chr15 (85373119-85373839)