Non-Coding RNA Search

unkn-SGD602702280.R1

Sequence:


               
               TTTTTTTATTTATCCTTTACTTGGTCACTTTTGTATTTTTACCCTCAAATACTAGTTTTT
CTTTGACTTTTTTTCCTCAAAGTATAAAAAGTATGAAATATAAACAAGCTCTTGCATTGC
ACACACTTCAAAGTGTACAATTCAAGCATTATAGAGCTATCTACATACTGATAAATCCCA
TCAAATCTTGGATAATTCAATAATATACAAAATACCAGGGCACAGAAAGAACTAAAACCC
ACTTCTTTTGATACACGTAAGATTCAAATATTCAATCTAAAGAAAAACACTTAATCATTT
TGGCTCTCCTCTACATTCGCATGTTGATATACTTATTAAAATATTCCTGTATAATTAATG
TTTGGTCTTATTATTTCAAGTCAGGTTCAAAACCAGCCATCCAGACAAAACAGGTAATCA
GAAAGACTATTTCTTCCCCACCTCCCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTATTTATCCTTTACTTGGTCACTTTTGTATTTTTACCCTCAAATACTAGTTTTT
CTTTGACTTTTTTTCCTCAAAGTATAAAAAGTATGAAATATAAACAAGCTCTTGCATTGC
ACACACTTCAAAGTGTACAATTCAAGCATTATAGAGCTATCTACATACTGATAAATCCCA
TCAAATCTTGGATAATTCAATAATATACAAAATACCAGGGCACAGAAAGAACTAAAACCC
ACTTCTTTTGATACACGTAAGATTCAAATATTCAATCTAAAGAAAAACACTTAATCATTT
TGGCTCTCCTCTACATTCGCATGTTGATATACTTATTAAAATATTCCTGTATAATTAATG
TTTGGTCTTATTATTTCAAGTCAGGTTCAAAACCAGCCATCCAGACAAAACAGGTAATCA
GAAAGACTATTTCTTCCCCACCTCCCTAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-236, - strand, RNAz p=0.900389
               

               
               318-449, - strand, RNAz p=0.987406

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-236, - strand, RNAz p=0.900389
               

               
               318-449, - strand, RNAz p=0.987406

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               86-198, - strand, RNAmicro p=0.999969

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               86-198, - strand, RNAmicro p=0.999969

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005721, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005721, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-449, gnl|bosTau2|chr2 (41610605-41610157)
               

               
               1-449, gnl|canFam2|chr19 (38118241-38117697)
               

               
               1-449, gnl|dasNov1|scaffold_182977 (832-1362)
               

               
               1-449, gnl|echTel1|scaffold_277615 (106798-106257)
               

               
               1-449, gnl|galGal2|chr7 (30289460-30288895)
               

               
               1-449, gnl|Hg17|chr2 (114431732-114431286)
               

               
               1-449, gnl|hg17|chr6 (141426236-141426774)
               

               
               1-449, gnl|loxAfr1|scaffold_101290 (3996-3472)
               

               
               1-449, gnl|Mm7|chr1 (125271761-125272186)
               

               
               1-449, gnl|mm7|chrX (77208186-77207677)
               

               
               1-449, gnl|monDom2|scaffold_2 (17241066-17240528)
               

               
               1-449, gnl|oryCun1|scaffold_214638 (94714-95252)
               

               
               1-449, gnl|panTro1|chr5 (144325072-144325610)
               

               
               1-449, gnl|rheMac2|chr4 (122668275-122667736)
               

               
               1-449, gnl|rn3|chr13 (37876413-37875909)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-449, gnl|bosTau2|chr2 (41610605-41610157)
               

               
               1-449, gnl|canFam2|chr19 (38118241-38117697)
               

               
               1-449, gnl|dasNov1|scaffold_182977 (832-1362)
               

               
               1-449, gnl|echTel1|scaffold_277615 (106798-106257)
               

               
               1-449, gnl|galGal2|chr7 (30289460-30288895)
               

               
               1-449, gnl|Hg17|chr2 (114431732-114431286)
               

               
               1-449, gnl|hg17|chr6 (141426236-141426774)
               

               
               1-449, gnl|loxAfr1|scaffold_101290 (3996-3472)
               

               
               1-449, gnl|Mm7|chr1 (125271761-125272186)
               

               
               1-449, gnl|mm7|chrX (77208186-77207677)
               

               
               1-449, gnl|monDom2|scaffold_2 (17241066-17240528)
               

               
               1-449, gnl|oryCun1|scaffold_214638 (94714-95252)
               

               
               1-449, gnl|panTro1|chr5 (144325072-144325610)
               

               
               1-449, gnl|rheMac2|chr4 (122668275-122667736)
               

               
               1-449, gnl|rn3|chr13 (37876413-37875909)

	40-236, - strand, RNAz p=0.900389
	318-449, - strand, RNAz p=0.987406

	1-449, gnl\|bosTau2\|chr2 (41610605-41610157)
	1-449, gnl\|canFam2\|chr19 (38118241-38117697)
	1-449, gnl\|dasNov1\|scaffold_182977 (832-1362)
	1-449, gnl\|echTel1\|scaffold_277615 (106798-106257)
	1-449, gnl\|galGal2\|chr7 (30289460-30288895)
	1-449, gnl\|Hg17\|chr2 (114431732-114431286)
	1-449, gnl\|hg17\|chr6 (141426236-141426774)
	1-449, gnl\|loxAfr1\|scaffold_101290 (3996-3472)
	1-449, gnl\|Mm7\|chr1 (125271761-125272186)
	1-449, gnl\|mm7\|chrX (77208186-77207677)
	1-449, gnl\|monDom2\|scaffold_2 (17241066-17240528)
	1-449, gnl\|oryCun1\|scaffold_214638 (94714-95252)
	1-449, gnl\|panTro1\|chr5 (144325072-144325610)
	1-449, gnl\|rheMac2\|chr4 (122668275-122667736)
	1-449, gnl\|rn3\|chr13 (37876413-37875909)