Non-Coding RNA Search

unkn-SGD602702296.R1

Sequence:


               
               TTTTTTTACGGCATACACTTTATTAATGGTAAAGTGTTTGCATTTATTTTTAAAAGCTTA
GCTCTTGCTAAGCACTTTTTAAGAGAAAGCTAATAAATGAGAATCATTTGCCATACAAAA
ACTATATTCACAAACAAGACTTTAATCAAATGAAAGCTAAAAAACACTGGAAAAAATATA
AAGCAAATCACTGCTATAATGTTTTTTTAAACTGCCTTCTATCACTAAATATAATGTATC
TAGAATGACACAAGTTCACTGAACAGAACAATTCTGTGGATTCAGTCTAAGTAAGACCAG
CGTTAAACGAGTGTCATGCAATTCATGATTTTCTTAACAACAGAAGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTACGGCATACACTTTATTAATGGTAAAGTGTTTGCATTTATTTTTAAAAGCTTA
GCTCTTGCTAAGCACTTTTTAAGAGAAAGCTAATAAATGAGAATCATTTGCCATACAAAA
ACTATATTCACAAACAAGACTTTAATCAAATGAAAGCTAAAAAACACTGGAAAAAATATA
AAGCAAATCACTGCTATAATGTTTTTTTAAACTGCCTTCTATCACTAAATATAATGTATC
TAGAATGACACAAGTTCACTGAACAGAACAATTCTGTGGATTCAGTCTAAGTAAGACCAG
CGTTAAACGAGTGTCATGCAATTCATGATTTTCTTAACAACAGAAGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               6-120, - strand, RNAz p=0.606385

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-120, - strand, RNAz p=0.606385

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_020774, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_020774, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               6-349, gnl|bosTau2|chr24 (24737496-24737832)
               

               
               6-349, gnl|canFam2|chr7 (69215719-69215300)
               

               
               6-349, gnl|dasNov1|scaffold_124620 (1215-777)
               

               
               6-349, gnl|echTel1|scaffold_312695 (2298-1838)
               

               
               6-349, gnl|galGal2|chr2 (101759050-101759464)
               

               
               6-349, gnl|hg17|chr18 (17703735-17704154)
               

               
               6-349, gnl|Hg17|chr18 (17704124-17703795)
               

               
               6-349, gnl|loxAfr1|scaffold_6708 (42684-42263)
               

               
               6-349, gnl|mm7|chr18 (11023900-11024324)
               

               
               6-349, gnl|Mm7|chr18 (11024302-11023961)
               

               
               6-349, gnl|monDom2|scaffold_21 (36638442-36638832)
               

               
               6-349, gnl|oryCun1|scaffold_214026 (1061-629)
               

               
               6-349, gnl|panTro1|chr17 (13606117-13606536)
               

               
               6-349, gnl|rheMac2|chr18 (14878527-14878938)
               

               
               6-349, gnl|rn3|chr18 (2229911-2230325)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-349, gnl|bosTau2|chr24 (24737496-24737832)
               

               
               6-349, gnl|canFam2|chr7 (69215719-69215300)
               

               
               6-349, gnl|dasNov1|scaffold_124620 (1215-777)
               

               
               6-349, gnl|echTel1|scaffold_312695 (2298-1838)
               

               
               6-349, gnl|galGal2|chr2 (101759050-101759464)
               

               
               6-349, gnl|hg17|chr18 (17703735-17704154)
               

               
               6-349, gnl|Hg17|chr18 (17704124-17703795)
               

               
               6-349, gnl|loxAfr1|scaffold_6708 (42684-42263)
               

               
               6-349, gnl|mm7|chr18 (11023900-11024324)
               

               
               6-349, gnl|Mm7|chr18 (11024302-11023961)
               

               
               6-349, gnl|monDom2|scaffold_21 (36638442-36638832)
               

               
               6-349, gnl|oryCun1|scaffold_214026 (1061-629)
               

               
               6-349, gnl|panTro1|chr17 (13606117-13606536)
               

               
               6-349, gnl|rheMac2|chr18 (14878527-14878938)
               

               
               6-349, gnl|rn3|chr18 (2229911-2230325)

	6-349, gnl\|bosTau2\|chr24 (24737496-24737832)
	6-349, gnl\|canFam2\|chr7 (69215719-69215300)
	6-349, gnl\|dasNov1\|scaffold_124620 (1215-777)
	6-349, gnl\|echTel1\|scaffold_312695 (2298-1838)
	6-349, gnl\|galGal2\|chr2 (101759050-101759464)
	6-349, gnl\|hg17\|chr18 (17703735-17704154)
	6-349, gnl\|Hg17\|chr18 (17704124-17703795)
	6-349, gnl\|loxAfr1\|scaffold_6708 (42684-42263)
	6-349, gnl\|mm7\|chr18 (11023900-11024324)
	6-349, gnl\|Mm7\|chr18 (11024302-11023961)
	6-349, gnl\|monDom2\|scaffold_21 (36638442-36638832)
	6-349, gnl\|oryCun1\|scaffold_214026 (1061-629)
	6-349, gnl\|panTro1\|chr17 (13606117-13606536)
	6-349, gnl\|rheMac2\|chr18 (14878527-14878938)
	6-349, gnl\|rn3\|chr18 (2229911-2230325)