Non-Coding RNA Search

unkn-SGD602702302.R1

Sequence:


               
               TTTTTTTAGAGGAAATCATGGTCTTTAATTAGTTGAATTAATTCACATTTTTGATTTGTT
AGCAAGTGCCAGCTCATAGATGCTAGTTGAAGTGCAGAGCTTAGAAGGAAAAAAAAACAA
AAACTTAAACCTTAGTTCTTTGGAGATCAGCCCCTCCCTGGCACCATCAAATCCCGCGGC
GGTTTTTTCTCCCTTTCCACTCAGAACTCTTCACATTCGGGGGTTTTGAGTGTTTGACCA
TTCTCTCATCCTATTAGGTCTCTGTGAGTGATAGACAGGGAAAGAGGTATCTTCCCTGAC
GTGGGGCCTGTGAAAGACCAGTCTTATTTACATTTTTCTTCTCCTTCCTATGGAATGCTG
TCTCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTAGAGGAAATCATGGTCTTTAATTAGTTGAATTAATTCACATTTTTGATTTGTT
AGCAAGTGCCAGCTCATAGATGCTAGTTGAAGTGCAGAGCTTAGAAGGAAAAAAAAACAA
AAACTTAAACCTTAGTTCTTTGGAGATCAGCCCCTCCCTGGCACCATCAAATCCCGCGGC
GGTTTTTTCTCCCTTTCCACTCAGAACTCTTCACATTCGGGGGTTTTGAGTGTTTGACCA
TTCTCTCATCCTATTAGGTCTCTGTGAGTGATAGACAGGGAAAGAGGTATCTTCCCTGAC
GTGGGGCCTGTGAAAGACCAGTCTTATTTACATTTTTCTTCTCCTTCCTATGGAATGCTG
TCTCATCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               123-276, - strand, RNAz p=0.941123
               

               
               163-256, - strand, RNAz p=0.940574

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-276, - strand, RNAz p=0.941123
               

               
               163-256, - strand, RNAz p=0.940574

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_002644, -
               

               
               5' of NM_002644, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002644, -
               

               
               5' of NM_002644, -

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               6-368, gnl|bosTau2|chr16 (3971647-3971284)
               

               
               6-368, gnl|canFam2|chr7 (9024783-9025154)
               

               
               6-368, gnl|dasNov1|scaffold_46382 (484-158)
               

               
               6-368, gnl|hg17|chr1 (203490237-203490533)
               

               
               6-368, gnl|Hg17|chr1 (203490262-203490590)
               

               
               6-368, gnl|loxAfr1|scaffold_5057 (40826-40506)
               

               
               6-368, gnl|mm7|chr1 (130756358-130756080)
               

               
               6-368, gnl|oryCun1|scaffold_210184 (210439-210737)
               

               
               6-368, gnl|panTro1|chr1 (187071906-187072202)
               

               
               6-368, gnl|rheMac2|chr1 (163427795-163427500)
               

               
               6-368, gnl|rn3|chr13 (43819360-43819082)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-368, gnl|bosTau2|chr16 (3971647-3971284)
               

               
               6-368, gnl|canFam2|chr7 (9024783-9025154)
               

               
               6-368, gnl|dasNov1|scaffold_46382 (484-158)
               

               
               6-368, gnl|hg17|chr1 (203490237-203490533)
               

               
               6-368, gnl|Hg17|chr1 (203490262-203490590)
               

               
               6-368, gnl|loxAfr1|scaffold_5057 (40826-40506)
               

               
               6-368, gnl|mm7|chr1 (130756358-130756080)
               

               
               6-368, gnl|oryCun1|scaffold_210184 (210439-210737)
               

               
               6-368, gnl|panTro1|chr1 (187071906-187072202)
               

               
               6-368, gnl|rheMac2|chr1 (163427795-163427500)
               

               
               6-368, gnl|rn3|chr13 (43819360-43819082)

	123-276, - strand, RNAz p=0.941123
	163-256, - strand, RNAz p=0.940574

	6-368, gnl\|bosTau2\|chr16 (3971647-3971284)
	6-368, gnl\|canFam2\|chr7 (9024783-9025154)
	6-368, gnl\|dasNov1\|scaffold_46382 (484-158)
	6-368, gnl\|hg17\|chr1 (203490237-203490533)
	6-368, gnl\|Hg17\|chr1 (203490262-203490590)
	6-368, gnl\|loxAfr1\|scaffold_5057 (40826-40506)
	6-368, gnl\|mm7\|chr1 (130756358-130756080)
	6-368, gnl\|oryCun1\|scaffold_210184 (210439-210737)
	6-368, gnl\|panTro1\|chr1 (187071906-187072202)
	6-368, gnl\|rheMac2\|chr1 (163427795-163427500)
	6-368, gnl\|rn3\|chr13 (43819360-43819082)