Non-Coding RNA Search

unkn-SGD602702385.R1

Sequence:


               
               TTTTTTGGGGCAGGCAAAGGGGCTCCGGGTGGTTCCCTCCGGGTAATGGCCAGTGGGCAT
CACCGACACACAAGGACAAGAGGTGGCAGCAGACAGCTCTGCGAGGCCACAGCGCAGCAA
AATCCATTATTTAAGCCTCTGGGATCTGATCCTGGGTAGAGCAAGGGGGGGTGCAAGGGA
GTTTCCAAGATCTACGACTAGCCCTGGAGAAAGATGAGAACCTAGTCCCTATCCAGATGT
AATACAAACCCAGACAGGGACTCTGAGCCCAAGTACAGTAAAAGAGGCAACAAAGAATCG
TCGAGGGTCCAAAGACATGACATAATTGGCTGGGACAGCAATGCTCTCCAATTCCCCCAT
CACGGAATGCAGTTCAGGACGTAGATCGATTCTGCGGCTCCTTCCAGGGGGCACTCTACA
GCCTCTTCTGGCTGCGGCGGTGGACCCCTCGCCAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTGGGGCAGGCAAAGGGGCTCCGGGTGGTTCCCTCCGGGTAATGGCCAGTGGGCAT
CACCGACACACAAGGACAAGAGGTGGCAGCAGACAGCTCTGCGAGGCCACAGCGCAGCAA
AATCCATTATTTAAGCCTCTGGGATCTGATCCTGGGTAGAGCAAGGGGGGGTGCAAGGGA
GTTTCCAAGATCTACGACTAGCCCTGGAGAAAGATGAGAACCTAGTCCCTATCCAGATGT
AATACAAACCCAGACAGGGACTCTGAGCCCAAGTACAGTAAAAGAGGCAACAAAGAATCG
TCGAGGGTCCAAAGACATGACATAATTGGCTGGGACAGCAATGCTCTCCAATTCCCCCAT
CACGGAATGCAGTTCAGGACGTAGATCGATTCTGCGGCTCCTTCCAGGGGGCACTCTACA
GCCTCTTCTGGCTGCGGCGGTGGACCCCTCGCCAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               344-453, - strand, RNAz p=0.79661

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               344-453, - strand, RNAz p=0.79661

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB032417, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB032417, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-457, gnl|bosTau2|chr29 (4146371-4146834)
               

               
               2-457, gnl|canFam2|chr21 (15706757-15706195)
               

               
               2-457, gnl|dasNov1|scaffold_17822 (47255-47703)
               

               
               2-457, gnl|echTel1|scaffold_320129 (16668-16152)
               

               
               2-457, gnl|hg17|chr11 (86334920-86335480)
               

               
               2-457, gnl|Hg17|chr11 (86335210-86336002)
               

               
               2-457, gnl|mm7|chr7 (85349663-85349128)
               

               
               2-457, gnl|Mm7|chr7 (85349396-85348948)
               

               
               2-457, gnl|monDom2|scaffold_46 (570475-569913)
               

               
               2-457, gnl|oryCun1|scaffold_214626 (13621-13070)
               

               
               2-457, gnl|panTro1|chr9 (88170028-88170588)
               

               
               2-457, gnl|rheMac2|chr14 (85251780-85252330)
               

               
               2-457, gnl|rn3|chr1 (146040895-146040315)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-457, gnl|bosTau2|chr29 (4146371-4146834)
               

               
               2-457, gnl|canFam2|chr21 (15706757-15706195)
               

               
               2-457, gnl|dasNov1|scaffold_17822 (47255-47703)
               

               
               2-457, gnl|echTel1|scaffold_320129 (16668-16152)
               

               
               2-457, gnl|hg17|chr11 (86334920-86335480)
               

               
               2-457, gnl|Hg17|chr11 (86335210-86336002)
               

               
               2-457, gnl|mm7|chr7 (85349663-85349128)
               

               
               2-457, gnl|Mm7|chr7 (85349396-85348948)
               

               
               2-457, gnl|monDom2|scaffold_46 (570475-569913)
               

               
               2-457, gnl|oryCun1|scaffold_214626 (13621-13070)
               

               
               2-457, gnl|panTro1|chr9 (88170028-88170588)
               

               
               2-457, gnl|rheMac2|chr14 (85251780-85252330)
               

               
               2-457, gnl|rn3|chr1 (146040895-146040315)

	2-457, gnl\|bosTau2\|chr29 (4146371-4146834)
	2-457, gnl\|canFam2\|chr21 (15706757-15706195)
	2-457, gnl\|dasNov1\|scaffold_17822 (47255-47703)
	2-457, gnl\|echTel1\|scaffold_320129 (16668-16152)
	2-457, gnl\|hg17\|chr11 (86334920-86335480)
	2-457, gnl\|Hg17\|chr11 (86335210-86336002)
	2-457, gnl\|mm7\|chr7 (85349663-85349128)
	2-457, gnl\|Mm7\|chr7 (85349396-85348948)
	2-457, gnl\|monDom2\|scaffold_46 (570475-569913)
	2-457, gnl\|oryCun1\|scaffold_214626 (13621-13070)
	2-457, gnl\|panTro1\|chr9 (88170028-88170588)
	2-457, gnl\|rheMac2\|chr14 (85251780-85252330)
	2-457, gnl\|rn3\|chr1 (146040895-146040315)