Non-Coding RNA Search

unkn-endo-100

Sequence:


               
               TGAAGACCCTGTGGAAACAAGGACGGCCCCCTCGTCCTTCAGCCACTGCTGTCAAGCCCC
ATGTTCACCCTATGGACATTCAGATGGCGATCCTTCACTGTGCAGATGACTTTGCCAGAC
AGTATATTTTGGCCAAACTTGCCATTTGTCAGTTTGCCCTCCCCCTCCTCATACCTCACC
CCTGCAATGCTCAAATACAATTCTCTCTCTGGTCCCTCCGTCAAATTAGGAGGAGCTGGC
AGCAAGCAGGGAAACCAACAGAACAGGAGAAGGATAATTACAAGAATCAGCAGATGTGTC
GAGTCTCTACCCCCATTGTGTCCTTTATCAGAGTCGGAAAGGGCTTCTCTGCCTCCAAAT
CTCAGATCATGAACTCTCTGCTCAGTCAACGGAAACACGATGTCTTTTTTCACCGACACT
GCAAAGGGAGCAGCAGGGACTGTCTCTTGATGGTAGGTGTGGTGGAAGTCACCTGGTTCT
GTCCTGGGGCGGGAGGTGAGGACAGGTTTGACAACTGCTTGACCTTCACCAATCTCCGTG
GAGATGCGAAGAACACAAACAGCAACTCACCTTTTTGCAGAGGTCTCCTCTCTCATTGTG
GCCTCATGTCAACGTCTGATGACAACCAAGAAAGCCGAAAAGTTGTCCGGGCGCTGTGTC
AAGTCACCAAAACCTTTAATCTGTTTGCTTGACGATAAGAAAAAGCCATGTCAGTACCTG
CCCGGCGGGCGCTCGAAACCGAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGACCCTGTGGAAACAAGGACGGCCCCCTCGTCCTTCAGCCACTGCTGTCAAGCCCC
ATGTTCACCCTATGGACATTCAGATGGCGATCCTTCACTGTGCAGATGACTTTGCCAGAC
AGTATATTTTGGCCAAACTTGCCATTTGTCAGTTTGCCCTCCCCCTCCTCATACCTCACC
CCTGCAATGCTCAAATACAATTCTCTCTCTGGTCCCTCCGTCAAATTAGGAGGAGCTGGC
AGCAAGCAGGGAAACCAACAGAACAGGAGAAGGATAATTACAAGAATCAGCAGATGTGTC
GAGTCTCTACCCCCATTGTGTCCTTTATCAGAGTCGGAAAGGGCTTCTCTGCCTCCAAAT
CTCAGATCATGAACTCTCTGCTCAGTCAACGGAAACACGATGTCTTTTTTCACCGACACT
GCAAAGGGAGCAGCAGGGACTGTCTCTTGATGGTAGGTGTGGTGGAAGTCACCTGGTTCT
GTCCTGGGGCGGGAGGTGAGGACAGGTTTGACAACTGCTTGACCTTCACCAATCTCCGTG
GAGATGCGAAGAACACAAACAGCAACTCACCTTTTTGCAGAGGTCTCCTCTCTCATTGTG
GCCTCATGTCAACGTCTGATGACAACCAAGAAAGCCGAAAAGTTGTCCGGGCGCTGTGTC
AAGTCACCAAAACCTTTAATCTGTTTGCTTGACGATAAGAAAAAGCCATGTCAGTACCTG
CCCGGCGGGCGCTCGAAACCGAATTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               400-519, + strand, RNAz p=0.808054

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-519, + strand, RNAz p=0.808054

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               441-546, + strand, RNAmicro p=0.995892

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               441-546, + strand, RNAmicro p=0.995892

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-713, gnl|bosTau2|chr15 (29000106-28999429)
               

               
               40-713, gnl|Hg17|chr11 (6696814-6696140)
               

               
               40-713, gnl|Mm7|chr7 (101885043-101884369)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-713, gnl|bosTau2|chr15 (29000106-28999429)
               

               
               40-713, gnl|Hg17|chr11 (6696814-6696140)
               

               
               40-713, gnl|Mm7|chr7 (101885043-101884369)

	40-713, gnl\|bosTau2\|chr15 (29000106-28999429)
	40-713, gnl\|Hg17\|chr11 (6696814-6696140)
	40-713, gnl\|Mm7\|chr7 (101885043-101884369)