Non-Coding RNA Search

Emb1-C0005217_H15

Sequence:


               
               GGCCGCCCAAATGAGAAAGCTCGTCAGTAAAAAGCAAACATATAGTAAAAGTAGGAAATC
ATCCACACACAAATAGGATGTCAAAACCAGAAACTATGAGGAGAGTACAAACACAGGATA
TGGGAAATGAATTTGAAATTAAGAGACCAGCAGCTTAGCCTTGTATTTATATAAACTGCT
ATATAAAAACCTCATGAGAACTGCAAACCGAAAAACTTCAATAGATAAAACACACAAAAA
AGAAAAGACAATCCAAAACAACACTAAAGATGGTCATCAAATCACAAGAGAACAAAAGAG
GGGGGAAAAAGACTTGTAAAAACAAATCCAAAACAATTAAGAAAATGGCATAcatattga
taattaccctaaatgtaaatggattaaatgctccaaacaaaagatagagactggctgaag
gatacaaaaacaagacctgtatagatgctgtctacaagagatccactccagttctgggga
aacatacaaaccgaaagtgagaagatggaaaaaggtattccatgcaaatgaaaatcaaaa
gaaagctggagtcgcagtactcatatcagacaaaattagattttataataaaaatggtta
cAAGTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGCCCAAATGAGAAAGCTCGTCAGTAAAAAGCAAACATATAGTAAAAGTAGGAAATC
ATCCACACACAAATAGGATGTCAAAACCAGAAACTATGAGGAGAGTACAAACACAGGATA
TGGGAAATGAATTTGAAATTAAGAGACCAGCAGCTTAGCCTTGTATTTATATAAACTGCT
ATATAAAAACCTCATGAGAACTGCAAACCGAAAAACTTCAATAGATAAAACACACAAAAA
AGAAAAGACAATCCAAAACAACACTAAAGATGGTCATCAAATCACAAGAGAACAAAAGAG
GGGGGAAAAAGACTTGTAAAAACAAATCCAAAACAATTAAGAAAATGGCATAcatattga
taattaccctaaatgtaaatggattaaatgctccaaacaaaagatagagactggctgaag
gatacaaaaacaagacctgtatagatgctgtctacaagagatccactccagttctgggga
aacatacaaaccgaaagtgagaagatggaaaaaggtattccatgcaaatgaaaatcaaaa
gaaagctggagtcgcagtactcatatcagacaaaattagattttataataaaaatggtta
cAAGTGAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61886575|ref|XP_586939.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61886575|ref|XP_586939.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               86-198, - strand, RNAz p=0.985862
               

               
               433-552, - strand, RNAz p=0.624661

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-198, - strand, RNAz p=0.985862
               

               
               433-552, - strand, RNAz p=0.624661

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               10-608, gnl|bosTau2|chr10 (31524164-31524749)
               


               
               46-585, gnl|bosTau2|chr10 (38545829-38545284)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-608, gnl|bosTau2|chr10 (31524164-31524749)
               


               
               46-585, gnl|bosTau2|chr10 (38545829-38545284)

	86-198, - strand, RNAz p=0.985862
	433-552, - strand, RNAz p=0.624661

	10-608, gnl\|bosTau2\|chr10 (31524164-31524749)

	46-585, gnl\|bosTau2\|chr10 (38545829-38545284)