Non-Coding RNA Search

Ss1.1-4cip-UMC-p4civp1-015-b12.3.5

Sequence:


               
               GAGCTATGCAAAATTAAAGACGGGGGGGGCGAACAGATAACATGGATGGACTTTGGTGGC
CATTGAGTATCCCCTGAACGGAGTGTGGACACGGAGATCTTTACCCATGGCCTGGAAAGA
TAGCAAAGTGATTCCCCTCTTCCCCGGAAGGGGAGGGAACAGAGTGATGCTGAGCTTTCG
GAGTCATAGACCAAAGTCTGCTGTAGAACAAAGCGCGGAGGAGGACAGAGAATCGCAAAA
CAGACTCCCCAGACCACACTGTCAGTATTATTCACAGGCAATGCCGGACGTATGGAAGTC
TTGCCTTATTTCACAACTCTCGAAGGTAGCCGTGCAGCTGTGGATCATCACTGATCTCCA
ATAAAGTGTTCCTACTTTAACGTCGAAGCAAATAGCGTGTTTACATTCTTGAGGTCCTCC
GGGGGGAGGGGGGAGCTGTGATAAAACGAAATCGCGAAGGCAGTAATTTCCTTAACGTTA
TTTTTCTGATTGGTAATTATTTTTGACACTACTTAATTATGGTATGTCGTGAGACACTAA
AATCAAAAGCGGGAATCTCATCTAGACGTTAATTTTGTTGAGATTATCGGCGGCACAATC
ACGTGTAGAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTATGCAAAATTAAAGACGGGGGGGGCGAACAGATAACATGGATGGACTTTGGTGGC
CATTGAGTATCCCCTGAACGGAGTGTGGACACGGAGATCTTTACCCATGGCCTGGAAAGA
TAGCAAAGTGATTCCCCTCTTCCCCGGAAGGGGAGGGAACAGAGTGATGCTGAGCTTTCG
GAGTCATAGACCAAAGTCTGCTGTAGAACAAAGCGCGGAGGAGGACAGAGAATCGCAAAA
CAGACTCCCCAGACCACACTGTCAGTATTATTCACAGGCAATGCCGGACGTATGGAAGTC
TTGCCTTATTTCACAACTCTCGAAGGTAGCCGTGCAGCTGTGGATCATCACTGATCTCCA
ATAAAGTGTTCCTACTTTAACGTCGAAGCAAATAGCGTGTTTACATTCTTGAGGTCCTCC
GGGGGGAGGGGGGAGCTGTGATAAAACGAAATCGCGAAGGCAGTAATTTCCTTAACGTTA
TTTTTCTGATTGGTAATTATTTTTGACACTACTTAATTATGGTATGTCGTGAGACACTAA
AATCAAAAGCGGGAATCTCATCTAGACGTTAATTTTGTTGAGATTATCGGCGGCACAATC
ACGTGTAGAAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               109-218, + strand, RNAz p=0.907363

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               109-218, + strand, RNAz p=0.907363

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003822, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003822, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-612, gnl|bosTau2|chr16 (56528470-56527874)
               

               
               2-612, gnl|Hg17|chr1 (196876020-196876625)
               

               
               2-612, gnl|Mm7|chr1 (136732566-136731959)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-612, gnl|bosTau2|chr16 (56528470-56527874)
               

               
               2-612, gnl|Hg17|chr1 (196876020-196876625)
               

               
               2-612, gnl|Mm7|chr1 (136732566-136731959)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               cov (0.132153)

	2-612, gnl\|bosTau2\|chr16 (56528470-56527874)
	2-612, gnl\|Hg17\|chr1 (196876020-196876625)
	2-612, gnl\|Mm7\|chr1 (136732566-136731959)