Non-Coding RNA Search

Ss1.1-4cip-UMC-p4civp1-015-h09.3

Sequence:


               
               GAAAGAGCTAACCGCGGCCCTGTGACTCCACGGAGGTCCCCAGGACACGCCTTTTACATT
GTTATTGAACCGATCAGCGAACACAGACAAACGTGCCAACCCTTAAATCTACTCGCTGGA
TTTCATCTCCATGGCAACAAGCATGGAAGGTGAGACATCTCTGCCTGCGAAGTAACTTTC
TCCCCCTACCCTCCGCATTAACTGACAGGATTCCAATGCAGCTCCAGACGAGAAGTAGCA
TGTCTGCTTTTCTTGTATTTCTGAAGCTAGAGAGCAGGAGAAGAGATGGGGAGAGGGGAG
GGAGGAAGGAGTCTGCAGGTCTGCCGAGTTCAAATTCTAAAGGAGAAAGAGCCCTAATGT
TTCTGTTGCTGCATAGTAGCATGCCTTCCTCTACATGGGAAAATGAAGTTGAAGAGTTTG
ATAAAGGGACATTTGAATACGCACTTGCCTGAGTGTCCCAGCTTTGCAGTTTTTAGTGTT
ATATCAGAGGGGCACAGGATGGTCACAACTGTAATTTCCTTCGGCATGCTGGAAGAGGCT
CATTTTATTCACTGAATTCAATAAACATGGTTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGAGCTAACCGCGGCCCTGTGACTCCACGGAGGTCCCCAGGACACGCCTTTTACATT
GTTATTGAACCGATCAGCGAACACAGACAAACGTGCCAACCCTTAAATCTACTCGCTGGA
TTTCATCTCCATGGCAACAAGCATGGAAGGTGAGACATCTCTGCCTGCGAAGTAACTTTC
TCCCCCTACCCTCCGCATTAACTGACAGGATTCCAATGCAGCTCCAGACGAGAAGTAGCA
TGTCTGCTTTTCTTGTATTTCTGAAGCTAGAGAGCAGGAGAAGAGATGGGGAGAGGGGAG
GGAGGAAGGAGTCTGCAGGTCTGCCGAGTTCAAATTCTAAAGGAGAAAGAGCCCTAATGT
TTCTGTTGCTGCATAGTAGCATGCCTTCCTCTACATGGGAAAATGAAGTTGAAGAGTTTG
ATAAAGGGACATTTGAATACGCACTTGCCTGAGTGTCCCAGCTTTGCAGTTTTTAGTGTT
ATATCAGAGGGGCACAGGATGGTCACAACTGTAATTTCCTTCGGCATGCTGGAAGAGGCT
CATTTTATTCACTGAATTCAATAAACATGGTTACTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               262-373, + strand, RNAz p=0.589873

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               262-373, + strand, RNAz p=0.589873

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-373, gnl|bosTau2|chr10 (43015271-43014899)
               

               
               1-373, gnl|Hg17|chr15 (46271194-46271564)
               

               
               1-373, gnl|Mm7|chr2 (124877416-124877761)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-373, gnl|bosTau2|chr10 (43015271-43014899)
               

               
               1-373, gnl|Hg17|chr15 (46271194-46271564)
               

               
               1-373, gnl|Mm7|chr2 (124877416-124877761)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spc (0.113366)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	1-373, gnl\|bosTau2\|chr10 (43015271-43014899)
	1-373, gnl\|Hg17\|chr15 (46271194-46271564)
	1-373, gnl\|Mm7\|chr2 (124877416-124877761)