Non-Coding RNA Search

Ss1.1-Bla1-UMC-pcrybst1-018-b07.3

Sequence:


               
               TTGCATCAGCTGGCACGAGTGGCGCAAGCGGAGCGTTTCCGGGCGTTCAAGCCCAATTCT
ACCTGTCGTCCACTCTCCTGTGCAGCCTATCGTTTTGGATTTTTTTTTTTTTTTTTGTGA
TTTGCCGATGTCTGAGGAGAAAGCCCACAGCCCTTCAGGAAAGATGGGAGGCGAGGAGAA
GCCGGTGAGTGCCGGTGAGGAAAAGCGAAAGGAAGGAGGCAAGAAGAAGAACAAAGAAGG
ATCTGGGGATGGAGGTCGAGCAGAGTTGAATCCTTGGCCTGAATATATTAACACCCGTCT
TGAGATGTATAATAAACTAAAAGCAGAACATGATTCCATTCTGGCAGAAAAGGCAGAGAA
AGACAGCAAGCCAATTAAAGTCACCCTGCCCGATGGTAAACAGGTTGATGCAGAGTCTTG
GAAAACTACACCCTATCAAATTGCTTGTGGAATTAGTCAAGGCCTGGCTGACAACACTGT
TGTTGCTAAAGTGAATAAAGTTGTCTGGGATCTAGACCGTCCTCTGGAGGAAGATTGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCATCAGCTGGCACGAGTGGCGCAAGCGGAGCGTTTCCGGGCGTTCAAGCCCAATTCT
ACCTGTCGTCCACTCTCCTGTGCAGCCTATCGTTTTGGATTTTTTTTTTTTTTTTTGTGA
TTTGCCGATGTCTGAGGAGAAAGCCCACAGCCCTTCAGGAAAGATGGGAGGCGAGGAGAA
GCCGGTGAGTGCCGGTGAGGAAAAGCGAAAGGAAGGAGGCAAGAAGAAGAACAAAGAAGG
ATCTGGGGATGGAGGTCGAGCAGAGTTGAATCCTTGGCCTGAATATATTAACACCCGTCT
TGAGATGTATAATAAACTAAAAGCAGAACATGATTCCATTCTGGCAGAAAAGGCAGAGAA
AGACAGCAAGCCAATTAAAGTCACCCTGCCCGATGGTAAACAGGTTGATGCAGAGTCTTG
GAAAACTACACCCTATCAAATTGCTTGTGGAATTAGTCAAGGCCTGGCTGACAACACTGT
TGTTGCTAAAGTGAATAAAGTTGTCTGGGATCTAGACCGTCCTCTGGAGGAAGATTGTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61809673|ref|XP_612831.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61809673|ref|XP_612831.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-191, gnl|bosTau2|chr19 (20052640-20052831)
               

               
               1-191, gnl|Hg17|chr5 (33476830-33477013)
               

               
               1-191, gnl|Mm7|chr15 (11460066-11459890)
               


               
               264-456, gnl|bosTau2|chr19 (20059157-20059349)
               

               
               264-456, gnl|Hg17|chr5 (33484402-33484594)
               

               
               264-456, gnl|Mm7|chr15 (11452587-11452395)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-191, gnl|bosTau2|chr19 (20052640-20052831)
               

               
               1-191, gnl|Hg17|chr5 (33476830-33477013)
               

               
               1-191, gnl|Mm7|chr15 (11460066-11459890)
               


               
               264-456, gnl|bosTau2|chr19 (20059157-20059349)
               

               
               264-456, gnl|Hg17|chr5 (33484402-33484594)
               

               
               264-456, gnl|Mm7|chr15 (11452587-11452395)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	1-191, gnl\|bosTau2\|chr19 (20052640-20052831)
	1-191, gnl\|Hg17\|chr5 (33476830-33477013)
	1-191, gnl\|Mm7\|chr15 (11460066-11459890)

	264-456, gnl\|bosTau2\|chr19 (20059157-20059349)
	264-456, gnl\|Hg17\|chr5 (33484402-33484594)
	264-456, gnl\|Mm7\|chr15 (11452587-11452395)