Non-Coding RNA Search

Ss1.1-Blo1-PBL010024B02.5

Sequence:


               
               ACCCGGGTCTCCTCGATTGAAGCTGAGGCAAAGGTTCCAAACTGGCTGGGCTTCGAGCCA
GCATTACTGCTACCTGTAAACACTTGAAGGGGAAGGCTGGCTCCTCTAAGTCACTGATAC
TCTTTTTGCTGCTCTTCAAAAGTTCCCTCTACAGAGCAGAGGTGACTTCTGCAAAGCAGA
AGCCATACATCATTTATAACGATCTCTGGCAAAACCTCAGAAAAAAGATATGCTTTTGAC
TTAGCCGGATGTCCAAGGCTGTGGCAGGACCCAGCGAGGAGGCTCCGAAGGTGGCATGAG
CCACCATTCCAGCCGAGTGACAGCCTCGCGGGACAGTCTTCGCCTGCGGAGTGTGACACA
GTTAAAAAGGGGGAAAAAAAAAAAAAGCCACGAGCCACACGGTTGCCAATGAAATAGGAG
AGGGAGTGTTTTCCAAAGCACGTGGGGCTCTTCCTGGGCTCCGGGCTCATCCTCCGGACA
GGAGTGCAAGGCCATGAGCGAGACTTCAGCTCGGGTCTAGGAGGAGCCGGGACATGGCCC
ACGAAGTCAACCTGCATTCCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCGGGTCTCCTCGATTGAAGCTGAGGCAAAGGTTCCAAACTGGCTGGGCTTCGAGCCA
GCATTACTGCTACCTGTAAACACTTGAAGGGGAAGGCTGGCTCCTCTAAGTCACTGATAC
TCTTTTTGCTGCTCTTCAAAAGTTCCCTCTACAGAGCAGAGGTGACTTCTGCAAAGCAGA
AGCCATACATCATTTATAACGATCTCTGGCAAAACCTCAGAAAAAAGATATGCTTTTGAC
TTAGCCGGATGTCCAAGGCTGTGGCAGGACCCAGCGAGGAGGCTCCGAAGGTGGCATGAG
CCACCATTCCAGCCGAGTGACAGCCTCGCGGGACAGTCTTCGCCTGCGGAGTGTGACACA
GTTAAAAAGGGGGAAAAAAAAAAAAAGCCACGAGCCACACGGTTGCCAATGAAATAGGAG
AGGGAGTGTTTTCCAAAGCACGTGGGGCTCTTCCTGGGCTCCGGGCTCATCCTCCGGACA
GGAGTGCAAGGCCATGAGCGAGACTTCAGCTCGGGTCTAGGAGGAGCCGGGACATGGCCC
ACGAAGTCAACCTGCATTCCCTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               110-213, + strand, RNAz p=0.974372

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-213, + strand, RNAz p=0.974372

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               32-562, gnl|bosTau2|chr9 (55852585-55853116)
               

               
               32-562, gnl|Hg17|chr6 (159054189-159054738)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-562, gnl|bosTau2|chr9 (55852585-55853116)
               

               
               32-562, gnl|Hg17|chr6 (159054189-159054738)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	32-562, gnl\|bosTau2\|chr9 (55852585-55853116)
	32-562, gnl\|Hg17\|chr6 (159054189-159054738)