Non-Coding RNA Search

Ss1.1-Blo1-PBL010024C05.5

Sequence:


               
               AGCCCAGCCCGGCACCACCATGCTCACCCTAGAGGCTGCACAGCTCGACGGGCCACACTA
CAGCTGTCTGTACCCAGATGGAGTCTTCTACGATCTGGACAGCTGCAAGCACTCCAGCTA
CCCAGACTCATAGGGGGCTCCTGACCTGTGGAGCTATGGCCTCAGTCCGGCTGTCCCAGC
TGCCTCCTATGAACCATTTGACCCGGCCGTGGCCACCTTTGGCCACCCCCAGGGTGTCCA
GCTCTGTTACGGACCCTCAAGCTACAGCCCTGTGGGGAGCCTGGACCCGGCTCCCAGCCT
GGAGGTCCCAGGACCCGGCTTCCCAGCGTACCCCACCGAGGACTTCGCCAGCCAGACCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCCAGCCCGGCACCACCATGCTCACCCTAGAGGCTGCACAGCTCGACGGGCCACACTA
CAGCTGTCTGTACCCAGATGGAGTCTTCTACGATCTGGACAGCTGCAAGCACTCCAGCTA
CCCAGACTCATAGGGGGCTCCTGACCTGTGGAGCTATGGCCTCAGTCCGGCTGTCCCAGC
TGCCTCCTATGAACCATTTGACCCGGCCGTGGCCACCTTTGGCCACCCCCAGGGTGTCCA
GCTCTGTTACGGACCCTCAAGCTACAGCCCTGTGGGGAGCCTGGACCCGGCTCCCAGCCT
GGAGGTCCCAGGACCCGGCTTCCCAGCGTACCCCACCGAGGACTTCGCCAGCCAGACCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61840171|ref|XP_583268.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61840171|ref|XP_583268.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               143-295, - strand, RNAz p=0.976373
               

               
               216-323, - strand, RNAz p=0.885594

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               143-295, - strand, RNAz p=0.976373
               

               
               216-323, - strand, RNAz p=0.885594

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               143-355, gnl|bosTau2|chr18 (49253847-49254059)
               

               
               143-355, gnl|canFam2|chr1 (109180194-109179933)
               

               
               143-355, gnl|echTel1|scaffold_267613 (4796-5027)
               

               
               143-355, gnl|hg17|chr19 (55617881-55618141)
               

               
               143-355, gnl|Hg17|chr19 (55617891-55618106)
               

               
               143-355, gnl|loxAfr1|scaffold_89047 (7983-7730)
               

               
               143-355, gnl|mm7|chr7 (40704143-40703879)
               

               
               143-355, gnl|Mm7|chr7 (40704131-40703901)
               

               
               143-355, gnl|panTro1|chr20_random (26098849-26099109)
               

               
               143-355, gnl|rheMac2|chr19 (56629526-56629786)
               

               
               143-355, gnl|rn3|chr1 (95085687-95085415)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-355, gnl|bosTau2|chr18 (49253847-49254059)
               

               
               143-355, gnl|canFam2|chr1 (109180194-109179933)
               

               
               143-355, gnl|echTel1|scaffold_267613 (4796-5027)
               

               
               143-355, gnl|hg17|chr19 (55617881-55618141)
               

               
               143-355, gnl|Hg17|chr19 (55617891-55618106)
               

               
               143-355, gnl|loxAfr1|scaffold_89047 (7983-7730)
               

               
               143-355, gnl|mm7|chr7 (40704143-40703879)
               

               
               143-355, gnl|Mm7|chr7 (40704131-40703901)
               

               
               143-355, gnl|panTro1|chr20_random (26098849-26099109)
               

               
               143-355, gnl|rheMac2|chr19 (56629526-56629786)
               

               
               143-355, gnl|rn3|chr1 (95085687-95085415)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               cty (0.10408)

	143-295, - strand, RNAz p=0.976373
	216-323, - strand, RNAz p=0.885594

	143-355, gnl\|bosTau2\|chr18 (49253847-49254059)
	143-355, gnl\|canFam2\|chr1 (109180194-109179933)
	143-355, gnl\|echTel1\|scaffold_267613 (4796-5027)
	143-355, gnl\|hg17\|chr19 (55617881-55618141)
	143-355, gnl\|Hg17\|chr19 (55617891-55618106)
	143-355, gnl\|loxAfr1\|scaffold_89047 (7983-7730)
	143-355, gnl\|mm7\|chr7 (40704143-40703879)
	143-355, gnl\|Mm7\|chr7 (40704131-40703901)
	143-355, gnl\|panTro1\|chr20_random (26098849-26099109)
	143-355, gnl\|rheMac2\|chr19 (56629526-56629786)
	143-355, gnl\|rn3\|chr1 (95085687-95085415)