Non-Coding RNA Search

Ss1.1-Blo1-PBL010030F02.5

Sequence:


               
               TTTTTTTTTCGCGCTGGAGTGGAGCAGCCTCTAGAACGAGCTGGAGGATTCTGCCTACTT
ACACAGAGCCTTGAAGTCGTCCGGGGCCGCCATTACAATCCACGTCCATCCGCTTGGAAA
TGGCCTTCGTCTCGGCCTATGACCGGTCCCGGCGGACAGTACAGACCCTATAGAAGCCCC
CGAAGCTCCCCTTTTTCGGGCCCCGCCCAATCCTCGGAGTCTGTCCACCCCCTCTACTCC
GCCCTCAAGAGGATTTCGAAGATTGAGGCGGCGGCTCCCTAAACCACTTTTCGTGTTCAT
CCGCCTCCATCCGAGATCGAAACGGGACCTCGTCTGCCCCGGTCGGTCCCAGCAGGAAGA
GGGGATCCTTGCAGACCAACAGCGGGCGGTATTGACGACGGTGTCTGGGATCGGGGGCCG
TCCTGGGGTTTGAAGAGTCCGTCCCCCTTCGCTCGCCCGCTTCTGCTAAGACCGCCGCCA
TTTTCTCGCTGTCCGCCTCCTGCGGAGCGCGCCAAGCTGCCGGGAGTTCTCCCAGAAACA
GCGGAGAAGACTGCTTTCTCGCCGGCCCGGCCGGGTGGGGGTTGTCGCCTGGAGGGCCAA
GGGCGACGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTCGCGCTGGAGTGGAGCAGCCTCTAGAACGAGCTGGAGGATTCTGCCTACTT
ACACAGAGCCTTGAAGTCGTCCGGGGCCGCCATTACAATCCACGTCCATCCGCTTGGAAA
TGGCCTTCGTCTCGGCCTATGACCGGTCCCGGCGGACAGTACAGACCCTATAGAAGCCCC
CGAAGCTCCCCTTTTTCGGGCCCCGCCCAATCCTCGGAGTCTGTCCACCCCCTCTACTCC
GCCCTCAAGAGGATTTCGAAGATTGAGGCGGCGGCTCCCTAAACCACTTTTCGTGTTCAT
CCGCCTCCATCCGAGATCGAAACGGGACCTCGTCTGCCCCGGTCGGTCCCAGCAGGAAGA
GGGGATCCTTGCAGACCAACAGCGGGCGGTATTGACGACGGTGTCTGGGATCGGGGGCCG
TCCTGGGGTTTGAAGAGTCCGTCCCCCTTCGCTCGCCCGCTTCTGCTAAGACCGCCGCCA
TTTTCTCGCTGTCCGCCTCCTGCGGAGCGCGCCAAGCTGCCGGGAGTTCTCCCAGAAACA
GCGGAGAAGACTGCTTTCTCGCCGGCCCGGCCGGGTGGGGGTTGTCGCCTGGAGGGCCAA
GGGCGACGGCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               126-323, - strand, RNAz p=0.963869

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-323, - strand, RNAz p=0.963869

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               252-320, + strand, RNAmicro p=0.946747
               

               
               13-140, - strand, RNAmicro p=0.927007

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               252-320, + strand, RNAmicro p=0.946747
               

               
               13-140, - strand, RNAmicro p=0.927007

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-612, gnl|bosTau2|chr23 (5658801-5658198)
               

               
               7-612, gnl|Hg17|chr6 (33047957-33048553)
               

               
               7-612, gnl|Mm7|chr17 (32199223-32198626)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-612, gnl|bosTau2|chr23 (5658801-5658198)
               

               
               7-612, gnl|Hg17|chr6 (33047957-33048553)
               

               
               7-612, gnl|Mm7|chr17 (32199223-32198626)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	252-320, + strand, RNAmicro p=0.946747
	13-140, - strand, RNAmicro p=0.927007

	7-612, gnl\|bosTau2\|chr23 (5658801-5658198)
	7-612, gnl\|Hg17\|chr6 (33047957-33048553)
	7-612, gnl\|Mm7\|chr17 (32199223-32198626)