Non-Coding RNA Search

Ss1.1-Blo1-PBL010038A01.5

Sequence:


               
               ATATTAATCTGTACTTTAGATGGATCTTTGTAATTTTTGGAATATGCATATACTACTGCA
CAGGAGGAGAAAAAATTGGCAAATGTGGGGAAGAAGTCATCATATAAAGTGACTACACAT
TTATATACACCCTGTTAGACTAGAACTTAATTCTATTAGTATACAGATTTCTAAACATCT
GGTCGAGTGTCTGTTTTTGATAAAATATGCCATAAGGCATTTTTCACTTTGCTTATACAT
ATGTGCTTAGATTGAGAATGTGATTGCTTATTATAATTTCAGAAACAGGTTGAGAAATTC
TTTTATTTTTATTTGCCTCTGATGTCTCTCCTGTCGATTTCCGTCCCTTACAAGGATCAG
GTTCTACAGTGAGGGTTTGAAGTACTTGGTCAAAAAGTACCCTTGAGGAGTTCCCGTTGT
GGTGCAGTGGTTGACGAATCCGACTAGGAACCACGAGGTTTCGGGTTCGACCCCTGGCCT
TGCTCAGTGGGTTGAGGATCTGGCGTTGCCGTGAGCTGTGGTGTAGGTCGCAGACTCGGC
TCGGATCCCAAGTTGCTGTGCCTGTGGCGTAGGCCGGCGGCTGCAGCTCTGATTGGACCC
CTAGCCTGGGAACCTCCATATGCTGTGGGAGTGGCC------------AAAAGACAAAAA
AAAAAAAAAGTACTCTTAAATTACTTGAGGTGATGCCATGCTGGAGATTGCTATACTGGC
TTTGTAAATTCTACACAATGGTTTGTTTTAGCATTAAAACAAACAATTTTTTCTTCAGTT
AAGTTCTAATGTAAAAGCTGACTTGTGCTTAAGTACAGTGTTGATGAAAAATATGTATTT
GTAAATACTAGAATTATCGTAACTCTGACAAAATGCTCACACTGTGAGGAGACACATGGG
AATGGAAGCCAGATAAGTGAACAGGCAGTTCAAGTCTGCCATCTTTGGTTGCCTCTAGAG
TGTATATTCAATGGATTGGAATAACTTTGAAGCCCAAACCATTCACATTGGTCTTTCTTT
TTTCTTTTTTTCTTTTGCCAATCACTGAAATTTGATTTTTTTTTAAAG------------
------------------------------------------------------------
------------------------------------------------------------
------------TCTGATTTGATTATCTTAAACAGATTATCCAGTTGCCTGTTTACTGTT
CAAAAATATTTTCTGACAGAAAAAAATCTTGAGATCCTCTGTAGTGGAAATTTACAGGTC
CATGGATTGAATCCAGCCTAGTATGATTATTCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTAATCTGTACTTTAGATGGATCTTTGTAATTTTTGGAATATGCATATACTACTGCA
CAGGAGGAGAAAAAATTGGCAAATGTGGGGAAGAAGTCATCATATAAAGTGACTACACAT
TTATATACACCCTGTTAGACTAGAACTTAATTCTATTAGTATACAGATTTCTAAACATCT
GGTCGAGTGTCTGTTTTTGATAAAATATGCCATAAGGCATTTTTCACTTTGCTTATACAT
ATGTGCTTAGATTGAGAATGTGATTGCTTATTATAATTTCAGAAACAGGTTGAGAAATTC
TTTTATTTTTATTTGCCTCTGATGTCTCTCCTGTCGATTTCCGTCCCTTACAAGGATCAG
GTTCTACAGTGAGGGTTTGAAGTACTTGGTCAAAAAGTACCCTTGAGGAGTTCCCGTTGT
GGTGCAGTGGTTGACGAATCCGACTAGGAACCACGAGGTTTCGGGTTCGACCCCTGGCCT
TGCTCAGTGGGTTGAGGATCTGGCGTTGCCGTGAGCTGTGGTGTAGGTCGCAGACTCGGC
TCGGATCCCAAGTTGCTGTGCCTGTGGCGTAGGCCGGCGGCTGCAGCTCTGATTGGACCC
CTAGCCTGGGAACCTCCATATGCTGTGGGAGTGGCC------------AAAAGACAAAAA
AAAAAAAAAGTACTCTTAAATTACTTGAGGTGATGCCATGCTGGAGATTGCTATACTGGC
TTTGTAAATTCTACACAATGGTTTGTTTTAGCATTAAAACAAACAATTTTTTCTTCAGTT
AAGTTCTAATGTAAAAGCTGACTTGTGCTTAAGTACAGTGTTGATGAAAAATATGTATTT
GTAAATACTAGAATTATCGTAACTCTGACAAAATGCTCACACTGTGAGGAGACACATGGG
AATGGAAGCCAGATAAGTGAACAGGCAGTTCAAGTCTGCCATCTTTGGTTGCCTCTAGAG
TGTATATTCAATGGATTGGAATAACTTTGAAGCCCAAACCATTCACATTGGTCTTTCTTT
TTTCTTTTTTTCTTTTGCCAATCACTGAAATTTGATTTTTTTTTAAAG------------
------------------------------------------------------------
------------------------------------------------------------
------------TCTGATTTGATTATCTTAAACAGATTATCCAGTTGCCTGTTTACTGTT
CAAAAATATTTTCTGACAGAAAAAAATCTTGAGATCCTCTGTAGTGGAAATTTACAGGTC
CATGGATTGAATCCAGCCTAGTATGATTATTCTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               147-261, + strand, RNAz p=0.833318

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-261, + strand, RNAz p=0.833318

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-434, gnl|bosTau2|chr10 (30429603-30430031)
               

               
               3-434, gnl|Hg17|chr15 (62592369-62592832)
               

               
               3-434, gnl|Mm7|chr9 (65811468-65811042)
               


               
               655-1063, gnl|bosTau2|chr10 (30429992-30430397)
               

               
               655-1063, gnl|Hg17|chr15 (62592794-62593516)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-434, gnl|bosTau2|chr10 (30429603-30430031)
               

               
               3-434, gnl|Hg17|chr15 (62592369-62592832)
               

               
               3-434, gnl|Mm7|chr9 (65811468-65811042)
               


               
               655-1063, gnl|bosTau2|chr10 (30429992-30430397)
               

               
               655-1063, gnl|Hg17|chr15 (62592794-62593516)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	3-434, gnl\|bosTau2\|chr10 (30429603-30430031)
	3-434, gnl\|Hg17\|chr15 (62592369-62592832)
	3-434, gnl\|Mm7\|chr9 (65811468-65811042)

	655-1063, gnl\|bosTau2\|chr10 (30429992-30430397)
	655-1063, gnl\|Hg17\|chr15 (62592794-62593516)