Ss1.1-Blo2-AR026B06PBC30IB06S.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACAGAGAGGAAATCTGCGTGTTTCTGCCACCGAGAAGTCCCTTAGAGGTGCTCCCTGC CTCCCACAGCACTGAGCACGTGCTGGGCGCCAGCAGTGCTGGAGAGGAGCGTGTGTGAGA CTGCCTGGTGGCAGAGACACAGCCACCCAAGCAAAAACAGTCACCACTGAGGAGTGCCTG GTGAACCCTGCAAGCATGAACCGCTACAGCGTGGATACCTCCTCCTCTGCCTTTAGCCAC AGGGGCTCCCTGCCCACCTCCTCTTCATTGTACTGCAAGAGGCAGAATTCTGGAGACGGC CACCTTGGGGGAGGCTCAGCCACCACATCCAGTGGTCCCCGCACCAGCCCCATGACCTCT GGAGGCCTCTCAGCTTCTGGGCTGAGGCCCCCTGGCTCCAGCCCCAAGAAAAATGGGACC TCTCTTGAAGGAAACAGATGTGCCTCAAGCCCTTCTCCCGACAGGCAGGATGCCCGGCGG CCAAGGAGCAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACAGAGAGGAAATCTGCGTGTTTCTGCCACCGAGAAGTCCCTTAGAGGTGCTCCCTGC CTCCCACAGCACTGAGCACGTGCTGGGCGCCAGCAGTGCTGGAGAGGAGCGTGTGTGAGA CTGCCTGGTGGCAGAGACACAGCCACCCAAGCAAAAACAGTCACCACTGAGGAGTGCCTG GTGAACCCTGCAAGCATGAACCGCTACAGCGTGGATACCTCCTCCTCTGCCTTTAGCCAC AGGGGCTCCCTGCCCACCTCCTCTTCATTGTACTGCAAGAGGCAGAATTCTGGAGACGGC CACCTTGGGGGAGGCTCAGCCACCACATCCAGTGGTCCCCGCACCAGCCCCATGACCTCT GGAGGCCTCTCAGCTTCTGGGCTGAGGCCCCCTGGCTCCAGCCCCAAGAAAAATGGGACC TCTCTTGAAGGAAACAGATGTGCCTCAAGCCCTTCTCCCGACAGGCAGGATGCCCGGCGG CCAAGGAGCAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 306-442, - strand, RNAz p=0.888645 | |
| 306-442, - strand, RNAz p=0.950688 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 306-442, - strand, RNAz p=0.888645 | |
| 306-442, - strand, RNAz p=0.950688 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 4-140, gnl|bosTau2|chr25 (25553362-25553227) | |
| 4-140, gnl|canFam2|chr12 (67875664-67875937) | |
| 4-140, gnl|dasNov1|scaffold_93 (222828-223066) | |
| 4-140, gnl|echTel1|scaffold_256274 (11446-11745) | |
| 4-140, gnl|hg17|chr6 (108159851-108160118) | |
| 4-140, gnl|Hg17|chr6 (108160028-108159881) | |
| 4-140, gnl|loxAfr1|scaffold_358 (43897-43613) | |
| 4-140, gnl|mm7|chr10 (42750935-42750710) | |
| 4-140, gnl|monDom2|scaffold_0 (113060162-113059881) | |
| 4-140, gnl|oryCun1|scaffold_203010 (3634-3394) | |
| 4-140, gnl|panTro1|chr5_random (2758043-2757776) | |
| 4-140, gnl|rheMac2|chr4 (103746781-103747047) | |
| 4-140, gnl|rn3|chr20 (46874287-46874060) | |
| 147-442, gnl|bosTau2|chr25 (25541767-25541472) | |
| 147-442, gnl|canFam2|chr12 (67865441-67865631) | |
| 147-442, gnl|dasNov1|scaffold_93 (217172-217362) | |
| 147-442, gnl|echTel1|scaffold_256274 (4820-5010) | |
| 147-442, gnl|galGal2|chr3 (66055942-66055770) | |
| 147-442, gnl|hg17|chr6 (108148591-108148781) | |
| 147-442, gnl|Hg17|chr6 (108148895-108148600) | |
| 147-442, gnl|loxAfr1|scaffold_358 (49518-49328) | |
| 147-442, gnl|mm7|chr10 (42757493-42757306) | |
| 147-442, gnl|Mm7|chr10 (42757205-42757482) | |
| 147-442, gnl|monDom2|scaffold_0 (113073025-113072835) | |
| 147-442, gnl|oryCun1|scaffold_174802 (65491-65300) | |
| 147-442, gnl|panTro1|chr5_random (2769282-2769092) | |
| 147-442, gnl|rheMac2|chr4 (103735556-103735746) | |
| 147-442, gnl|rn3|chr20 (46879488-46879298) | |
| 147-442, gnl|xenTro1|scaffold_408 (3547-3382) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-140, gnl|bosTau2|chr25 (25553362-25553227) | |
| 4-140, gnl|canFam2|chr12 (67875664-67875937) | |
| 4-140, gnl|dasNov1|scaffold_93 (222828-223066) | |
| 4-140, gnl|echTel1|scaffold_256274 (11446-11745) | |
| 4-140, gnl|hg17|chr6 (108159851-108160118) | |
| 4-140, gnl|Hg17|chr6 (108160028-108159881) | |
| 4-140, gnl|loxAfr1|scaffold_358 (43897-43613) | |
| 4-140, gnl|mm7|chr10 (42750935-42750710) | |
| 4-140, gnl|monDom2|scaffold_0 (113060162-113059881) | |
| 4-140, gnl|oryCun1|scaffold_203010 (3634-3394) | |
| 4-140, gnl|panTro1|chr5_random (2758043-2757776) | |
| 4-140, gnl|rheMac2|chr4 (103746781-103747047) | |
| 4-140, gnl|rn3|chr20 (46874287-46874060) | |
| 147-442, gnl|bosTau2|chr25 (25541767-25541472) | |
| 147-442, gnl|canFam2|chr12 (67865441-67865631) | |
| 147-442, gnl|dasNov1|scaffold_93 (217172-217362) | |
| 147-442, gnl|echTel1|scaffold_256274 (4820-5010) | |
| 147-442, gnl|galGal2|chr3 (66055942-66055770) | |
| 147-442, gnl|hg17|chr6 (108148591-108148781) | |
| 147-442, gnl|Hg17|chr6 (108148895-108148600) | |
| 147-442, gnl|loxAfr1|scaffold_358 (49518-49328) | |
| 147-442, gnl|mm7|chr10 (42757493-42757306) | |
| 147-442, gnl|Mm7|chr10 (42757205-42757482) | |
| 147-442, gnl|monDom2|scaffold_0 (113073025-113072835) | |
| 147-442, gnl|oryCun1|scaffold_174802 (65491-65300) | |
| 147-442, gnl|panTro1|chr5_random (2769282-2769092) | |
| 147-442, gnl|rheMac2|chr4 (103735556-103735746) | |
| 147-442, gnl|rn3|chr20 (46879488-46879298) | |
| 147-442, gnl|xenTro1|scaffold_408 (3547-3382) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| eli (0.151814) | |
| jej (0.0989218) |