Non-Coding RNA Search

Ss1.1-Blo2-AR041F04PBC30HF04S.5

Sequence:


               
               CTGTTTGGCTCATCTCCAAGTTAAGGGTTAACATATAACTACCATTCTCTAAATCTCTTC
TGCTCCCCGCATCTCAGACCCCTGAGGCACACAAGGGGAAAATGCAGCAGTTTATCTATT
TATTGAAGGGATCTTGATGGCTTCAGGTGGTATATTTAACCTCTGGGCAGGAGGGAGAGG
GCAGGAATCCTGCCCTATAGTTTTGGCCAGCTCTGAGCATGGCAGGGAGGGAAGTGTGTG
GAAGAGCTGGGGAAGGGACACCTGGGCAGTTACGTGCCCTACTCCCTGACTCCAAGGCCC
GGCTGGAGGAGGCTGGGCTGCAGCCTCACCCACCCTAACCTGGGCTCACACACTCCTGTG
GCCGAAGGGCCACCCTTATCCCCCTAATCGGCACACTCATAACCACATCCCCCATCTTCT
CCAAAAGCACCATTAGGAACGAGTGATTTTGGATGATGGATTTTTGATTTACAAACGGTG
CATTTCCCTTGGAGTGGAACAGAAAGGAAACCATTTAATGGCTCCCTTATTTTCAAGCAT
GAATACATTTTAATGAAACCATTTTATTGTATTTGAGGAAATGGAGAGTTGAACATTCCC
ACCAATCAATAGCCAATTAATTGCTATAAAGCTAAAAAGAAAATAAATAAGTCCTGAGTC
TATTCTAAACACCCTCCAAAGCTCAGAGCCTCCAAATCTGGCCTTCCC------------
CCACGTGAGGGTACACACACACACACACACACACACACACACACACACACACGAGCGCGT
GCATGCATGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTTTGGCTCATCTCCAAGTTAAGGGTTAACATATAACTACCATTCTCTAAATCTCTTC
TGCTCCCCGCATCTCAGACCCCTGAGGCACACAAGGGGAAAATGCAGCAGTTTATCTATT
TATTGAAGGGATCTTGATGGCTTCAGGTGGTATATTTAACCTCTGGGCAGGAGGGAGAGG
GCAGGAATCCTGCCCTATAGTTTTGGCCAGCTCTGAGCATGGCAGGGAGGGAAGTGTGTG
GAAGAGCTGGGGAAGGGACACCTGGGCAGTTACGTGCCCTACTCCCTGACTCCAAGGCCC
GGCTGGAGGAGGCTGGGCTGCAGCCTCACCCACCCTAACCTGGGCTCACACACTCCTGTG
GCCGAAGGGCCACCCTTATCCCCCTAATCGGCACACTCATAACCACATCCCCCATCTTCT
CCAAAAGCACCATTAGGAACGAGTGATTTTGGATGATGGATTTTTGATTTACAAACGGTG
CATTTCCCTTGGAGTGGAACAGAAAGGAAACCATTTAATGGCTCCCTTATTTTCAAGCAT
GAATACATTTTAATGAAACCATTTTATTGTATTTGAGGAAATGGAGAGTTGAACATTCCC
ACCAATCAATAGCCAATTAATTGCTATAAAGCTAAAAAGAAAATAAATAAGTCCTGAGTC
TATTCTAAACACCCTCCAAAGCTCAGAGCCTCCAAATCTGGCCTTCCC------------
CCACGTGAGGGTACACACACACACACACACACACACACACACACACACACACGAGCGCGT
GCATGCATGCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               417-534, - strand, RNAz p=0.799949

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               417-534, - strand, RNAz p=0.799949

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               250-758, gnl|bosTau2|chr8 (29643705-29643196)
               

               
               250-758, gnl|Hg17|chr9 (36824964-36824405)
               

               
               250-758, gnl|Mm7|chr4 (44540589-44539691)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               250-758, gnl|bosTau2|chr8 (29643705-29643196)
               

               
               250-758, gnl|Hg17|chr9 (36824964-36824405)
               

               
               250-758, gnl|Mm7|chr4 (44540589-44539691)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)
               

               
               cty (0.10408)

	250-758, gnl\|bosTau2\|chr8 (29643705-29643196)
	250-758, gnl\|Hg17\|chr9 (36824964-36824405)
	250-758, gnl\|Mm7\|chr4 (44540589-44539691)