Non-Coding RNA Search

Ss1.1-Blo2-AR041F06PBC30HF06S.5

Sequence:


               
               CTTTATTAAAGAAAAACTGTGCATGATTTACTTTTCACCAGTCTGTTCTGGCATGCTTCT
AATGATATCAGAATCACCTGGATCAATGATAGCCAGTGTGCACTGGGGCGGCGTCCCAGG
AGCAGTTGGTGGGTTGGTGCACCCAGCAGTTGCGGAAAACTTTCAGCCTGGATGTCAGTG
AGGAGATCATACAGTATATTTTGTCAATTGAGAGTGCTGAAGAGATACGAGAATATGTTA
CTGACCTCCTTCAGGGAAATGAGGGCAAAAAAGGTCAATTCATAGAAGAGCTTATAAACA
AATGGCAGAAGAATGACCAGGAGTTGATTTCTGATGCTCTGCAGCAGTCTTTCAAAAAAG
ACGAAATTTTAGATGGACAGAGATCAGGAGACCAGCTAAAGAGGAGTAGACGGAAAGGGA
GAAACAAACAGGAAGTTCCTGCATTTACTGAACCTGCGGAAGGCAGTTTTCTTGTAGATT
CTGGAGAAAAGAGGCAAGCCAAACTGTCTTTCCAGAAATTCCTTAATTCGAACATTTTGG
TTTGCTCCATCCGGGTTGTGTTAAATAGGATCTGAAATTTAAATGGAGGCGACGTGATAC
AGTGTAAAAATAGCTCCTGACTTGGGAGTCCCAGTTTTTATTTTCTGTGGTCATTCACCA
GTTTGAGAATCTTTGGAAACTTAATTTCCCTCTTTGTATCTTAAGTTCCGTATTCTATAG
AGTGAATAATTAGCATAAGTTATCTTTAACGCTTTATGATTCTAATGAAATGGAGATGGC
AACATGATTTAATATCGGCTTTCAATTGATTTTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTATTAAAGAAAAACTGTGCATGATTTACTTTTCACCAGTCTGTTCTGGCATGCTTCT
AATGATATCAGAATCACCTGGATCAATGATAGCCAGTGTGCACTGGGGCGGCGTCCCAGG
AGCAGTTGGTGGGTTGGTGCACCCAGCAGTTGCGGAAAACTTTCAGCCTGGATGTCAGTG
AGGAGATCATACAGTATATTTTGTCAATTGAGAGTGCTGAAGAGATACGAGAATATGTTA
CTGACCTCCTTCAGGGAAATGAGGGCAAAAAAGGTCAATTCATAGAAGAGCTTATAAACA
AATGGCAGAAGAATGACCAGGAGTTGATTTCTGATGCTCTGCAGCAGTCTTTCAAAAAAG
ACGAAATTTTAGATGGACAGAGATCAGGAGACCAGCTAAAGAGGAGTAGACGGAAAGGGA
GAAACAAACAGGAAGTTCCTGCATTTACTGAACCTGCGGAAGGCAGTTTTCTTGTAGATT
CTGGAGAAAAGAGGCAAGCCAAACTGTCTTTCCAGAAATTCCTTAATTCGAACATTTTGG
TTTGCTCCATCCGGGTTGTGTTAAATAGGATCTGAAATTTAAATGGAGGCGACGTGATAC
AGTGTAAAAATAGCTCCTGACTTGGGAGTCCCAGTTTTTATTTTCTGTGGTCATTCACCA
GTTTGAGAATCTTTGGAAACTTAATTTCCCTCTTTGTATCTTAAGTTCCGTATTCTATAG
AGTGAATAATTAGCATAAGTTATCTTTAACGCTTTATGATTCTAATGAAATGGAGATGGC
AACATGATTTAATATCGGCTTTCAATTGATTTTAAC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               2-102, gnl|bosTau2|chr15 (16258771-16258671)
               

               
               2-102, gnl|canFam2|chr5 (40873354-40873437)
               

               
               2-102, gnl|danRer3|chr19 (49262583-49262505)
               

               
               2-102, gnl|dasNov1|scaffold_85216 (5426-5352)
               

               
               2-102, gnl|echTel1|scaffold_40519 (1563-1480)
               

               
               2-102, gnl|hg17|chr12 (38748270-38748356)
               

               
               2-102, gnl|Hg17|chr18 (57223045-57223145)
               

               
               2-102, gnl|loxAfr1|scaffold_16375 (9329-9412)
               

               
               2-102, gnl|Mm7|chr11 (49635443-49635541)
               

               
               2-102, gnl|mm7|chr6 (38308116-38308038)
               

               
               2-102, gnl|monDom2|scaffold_61 (2108540-2108637)
               

               
               2-102, gnl|oryCun1|scaffold_137296 (3598-3681)
               

               
               2-102, gnl|panTro1|chr10 (39312706-39312792)
               

               
               2-102, gnl|rheMac2|chr11 (36944468-36944554)
               

               
               2-102, gnl|rn3|chr10 (38116253-38116332)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-102, gnl|bosTau2|chr15 (16258771-16258671)
               

               
               2-102, gnl|canFam2|chr5 (40873354-40873437)
               

               
               2-102, gnl|danRer3|chr19 (49262583-49262505)
               

               
               2-102, gnl|dasNov1|scaffold_85216 (5426-5352)
               

               
               2-102, gnl|echTel1|scaffold_40519 (1563-1480)
               

               
               2-102, gnl|hg17|chr12 (38748270-38748356)
               

               
               2-102, gnl|Hg17|chr18 (57223045-57223145)
               

               
               2-102, gnl|loxAfr1|scaffold_16375 (9329-9412)
               

               
               2-102, gnl|Mm7|chr11 (49635443-49635541)
               

               
               2-102, gnl|mm7|chr6 (38308116-38308038)
               

               
               2-102, gnl|monDom2|scaffold_61 (2108540-2108637)
               

               
               2-102, gnl|oryCun1|scaffold_137296 (3598-3681)
               

               
               2-102, gnl|panTro1|chr10 (39312706-39312792)
               

               
               2-102, gnl|rheMac2|chr11 (36944468-36944554)
               

               
               2-102, gnl|rn3|chr10 (38116253-38116332)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spl (0.143184)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	2-102, gnl\|bosTau2\|chr15 (16258771-16258671)
	2-102, gnl\|canFam2\|chr5 (40873354-40873437)
	2-102, gnl\|danRer3\|chr19 (49262583-49262505)
	2-102, gnl\|dasNov1\|scaffold_85216 (5426-5352)
	2-102, gnl\|echTel1\|scaffold_40519 (1563-1480)
	2-102, gnl\|hg17\|chr12 (38748270-38748356)
	2-102, gnl\|Hg17\|chr18 (57223045-57223145)
	2-102, gnl\|loxAfr1\|scaffold_16375 (9329-9412)
	2-102, gnl\|Mm7\|chr11 (49635443-49635541)
	2-102, gnl\|mm7\|chr6 (38308116-38308038)
	2-102, gnl\|monDom2\|scaffold_61 (2108540-2108637)
	2-102, gnl\|oryCun1\|scaffold_137296 (3598-3681)
	2-102, gnl\|panTro1\|chr10 (39312706-39312792)
	2-102, gnl\|rheMac2\|chr11 (36944468-36944554)
	2-102, gnl\|rn3\|chr10 (38116253-38116332)