Ss1.1-Blo2-AR042E08PBC30EE08S.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGTGCACCGCCGAGGGACGAGCAGGCTCTTGTAGTGTTGTGTGCGGGAGAGGCACGG CGGGCGGGCGAGCGAGAGCCAGCGGCTCACCCCAGCGGCTCACCCCAGCAGTGGCACTGG GATCGGTCGCCTTGAGCCTGAAATCATGACTACCCCAGGAAAAGAGAACTTTCGCCTGAA AAGTTATAAAAATAAGTCCCTGAATCCTGATGAGATGCGCAGGAGAAGGGAGGAAGAAGG ACTACAGTTACGTAAGCAGAAAAGAGAAGAGCAGTTATTCAAGCGAAGAAATGTTGCTAC AGCAGAAGAAGAAACAGAAGAAGAAGTTATGTCAGATGGAGGCTTCCATGAGGCCCAGAT TAATAACATGGAAATGGCACCAGGTGGTGTTATTACTTCCGACATGATTGAAATGATATT TTCCAATAGCCCAGAGCAACAGCTTTCAGCAACACAGAAATTCAGAAAACTGCTTTCAAA AGAACCTAATCCTCCTATTGATGAAGTCATCAGCACACCAGGAGTAGTGGCCAGGTTTGT GGAGTTCCTCAAACGAAAAGAGAATTGTACCCTGCAGTTTGAATCAGCTTGGGTACTGAC AAATATTGCTTCAGGAAATTCTCTTCAGACCCGGATTGTGATTCAAGCAGGAGCTGTGCC TATCTTCATAGAGTTGCTCAGCTCAGAGTTTGAAGATGTCCAGGAGCAGGCAGTCTGGGC CCTTGGCAACATTGCTGGAGATAGTACCATGTGCAGGGACTATGTCTTAGACTGCAATAT TCTTCCTCCTCTTTTGCAATTATTTTCAAAGCAAAACCGCCTGACCATGACCCGGAATGC AGTATGGGCTTTGTCTAATCTCTGTAGAGGGAAAAGTCCACCTCCAGAATTTGCAAAGGT TTCCCCCTGTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGTGCACCGCCGAGGGACGAGCAGGCTCTTGTAGTGTTGTGTGCGGGAGAGGCACGG CGGGCGGGCGAGCGAGAGCCAGCGGCTCACCCCAGCGGCTCACCCCAGCAGTGGCACTGG GATCGGTCGCCTTGAGCCTGAAATCATGACTACCCCAGGAAAAGAGAACTTTCGCCTGAA AAGTTATAAAAATAAGTCCCTGAATCCTGATGAGATGCGCAGGAGAAGGGAGGAAGAAGG ACTACAGTTACGTAAGCAGAAAAGAGAAGAGCAGTTATTCAAGCGAAGAAATGTTGCTAC AGCAGAAGAAGAAACAGAAGAAGAAGTTATGTCAGATGGAGGCTTCCATGAGGCCCAGAT TAATAACATGGAAATGGCACCAGGTGGTGTTATTACTTCCGACATGATTGAAATGATATT TTCCAATAGCCCAGAGCAACAGCTTTCAGCAACACAGAAATTCAGAAAACTGCTTTCAAA AGAACCTAATCCTCCTATTGATGAAGTCATCAGCACACCAGGAGTAGTGGCCAGGTTTGT GGAGTTCCTCAAACGAAAAGAGAATTGTACCCTGCAGTTTGAATCAGCTTGGGTACTGAC AAATATTGCTTCAGGAAATTCTCTTCAGACCCGGATTGTGATTCAAGCAGGAGCTGTGCC TATCTTCATAGAGTTGCTCAGCTCAGAGTTTGAAGATGTCCAGGAGCAGGCAGTCTGGGC CCTTGGCAACATTGCTGGAGATAGTACCATGTGCAGGGACTATGTCTTAGACTGCAATAT TCTTCCTCCTCTTTTGCAATTATTTTCAAAGCAAAACCGCCTGACCATGACCCGGAATGC AGTATGGGCTTTGTCTAATCTCTGTAGAGGGAAAAGTCCACCTCCAGAATTTGCAAAGGT TTCCCCCTGTCT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 576-694, - strand, RNAz p=0.975632 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 576-694, - strand, RNAz p=0.975632 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 140-277, gnl|bosTau2|chr1 (34624608-34624745) | |
| 140-277, gnl|canFam2|chr33 (28651119-28651265) | |
| 140-277, gnl|danRer3|chr24 (17913330-17913493) | |
| 140-277, gnl|dasNov1|scaffold_200195 (750-605) | |
| 140-277, gnl|echTel1|scaffold_131603 (4395-4514) | |
| 140-277, gnl|fr1|chrUn (122734785-122734634) | |
| 140-277, gnl|galGal2|chrUn (17662242-17662384) | |
| 140-277, gnl|hg17|chr3 (123697968-123698114) | |
| 140-277, gnl|Hg17|chr3 (123698108-123697971) | |
| 140-277, gnl|loxAfr1|scaffold_80098 (5085-5231) | |
| 140-277, gnl|mm7|chr16 (35674536-35674390) | |
| 140-277, gnl|Mm7|chr16 (35674394-35674531) | |
| 140-277, gnl|monDom2|scaffold_24 (19900510-19900656) | |
| 140-277, gnl|oryCun1|scaffold_204165 (73871-73725) | |
| 140-277, gnl|panTro1|chr2 (125390019-125390165) | |
| 140-277, gnl|rheMac2|chr2 (42493461-42493607) | |
| 140-277, gnl|rn3|chr11 (66653352-66653498) | |
| 140-277, gnl|tetNig1|chr6 (3030825-3030944) | |
| 140-277, gnl|xenTro1|scaffold_1536 (25447-25588) | |
| 576-710, gnl|bosTau2|chr1 (34646214-34646348) | |
| 576-710, gnl|canFam2|chr33 (28624559-28624721) | |
| 576-710, gnl|danRer3|chr11 (7384551-7384387) | |
| 576-710, gnl|dasNov1|scaffold_9577 (67241-67404) | |
| 576-710, gnl|echTel1|scaffold_316246 (43636-43797) | |
| 576-710, gnl|fr1|chrUn (122735806-122735645) | |
| 576-710, gnl|galGal2|chr1 (69452024-69452188) | |
| 576-710, gnl|hg17|chr3 (123655396-123655557) | |
| 576-710, gnl|Hg17|chr3 (123655540-123655406) | |
| 576-710, gnl|loxAfr1|scaffold_12426 (26850-27012) | |
| 576-710, gnl|mm7|chr16 (35693609-35693458) | |
| 576-710, gnl|Mm7|chr16 (35693469-35693603) | |
| 576-710, gnl|monDom2|scaffold_24 (19870876-19871034) | |
| 576-710, gnl|oryCun1|scaffold_173664 (94585-94747) | |
| 576-710, gnl|panTro1|chr2 (125347521-125347682) | |
| 576-710, gnl|rheMac2|chr2 (42451923-42452084) | |
| 576-710, gnl|rn3|chr11 (66631902-66632055) | |
| 576-710, gnl|tetNig1|chr6 (3029869-3030018) | |
| 576-710, gnl|xenTro1|scaffold_1536 (21186-21351) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 140-277, gnl|bosTau2|chr1 (34624608-34624745) | |
| 140-277, gnl|canFam2|chr33 (28651119-28651265) | |
| 140-277, gnl|danRer3|chr24 (17913330-17913493) | |
| 140-277, gnl|dasNov1|scaffold_200195 (750-605) | |
| 140-277, gnl|echTel1|scaffold_131603 (4395-4514) | |
| 140-277, gnl|fr1|chrUn (122734785-122734634) | |
| 140-277, gnl|galGal2|chrUn (17662242-17662384) | |
| 140-277, gnl|hg17|chr3 (123697968-123698114) | |
| 140-277, gnl|Hg17|chr3 (123698108-123697971) | |
| 140-277, gnl|loxAfr1|scaffold_80098 (5085-5231) | |
| 140-277, gnl|mm7|chr16 (35674536-35674390) | |
| 140-277, gnl|Mm7|chr16 (35674394-35674531) | |
| 140-277, gnl|monDom2|scaffold_24 (19900510-19900656) | |
| 140-277, gnl|oryCun1|scaffold_204165 (73871-73725) | |
| 140-277, gnl|panTro1|chr2 (125390019-125390165) | |
| 140-277, gnl|rheMac2|chr2 (42493461-42493607) | |
| 140-277, gnl|rn3|chr11 (66653352-66653498) | |
| 140-277, gnl|tetNig1|chr6 (3030825-3030944) | |
| 140-277, gnl|xenTro1|scaffold_1536 (25447-25588) | |
| 576-710, gnl|bosTau2|chr1 (34646214-34646348) | |
| 576-710, gnl|canFam2|chr33 (28624559-28624721) | |
| 576-710, gnl|danRer3|chr11 (7384551-7384387) | |
| 576-710, gnl|dasNov1|scaffold_9577 (67241-67404) | |
| 576-710, gnl|echTel1|scaffold_316246 (43636-43797) | |
| 576-710, gnl|fr1|chrUn (122735806-122735645) | |
| 576-710, gnl|galGal2|chr1 (69452024-69452188) | |
| 576-710, gnl|hg17|chr3 (123655396-123655557) | |
| 576-710, gnl|Hg17|chr3 (123655540-123655406) | |
| 576-710, gnl|loxAfr1|scaffold_12426 (26850-27012) | |
| 576-710, gnl|mm7|chr16 (35693609-35693458) | |
| 576-710, gnl|Mm7|chr16 (35693469-35693603) | |
| 576-710, gnl|monDom2|scaffold_24 (19870876-19871034) | |
| 576-710, gnl|oryCun1|scaffold_173664 (94585-94747) | |
| 576-710, gnl|panTro1|chr2 (125347521-125347682) | |
| 576-710, gnl|rheMac2|chr2 (42451923-42452084) | |
| 576-710, gnl|rn3|chr11 (66631902-66632055) | |
| 576-710, gnl|tetNig1|chr6 (3029869-3030018) | |
| 576-710, gnl|xenTro1|scaffold_1536 (21186-21351) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) | |
| cty (0.10408) |