Non-Coding RNA Search

Ss1.1-Bra1-PBL_11_C12.5

Sequence:


               
               GGAATTCCCGGGTCGACCCACGCGTCCGCTGTAACAACATGCCTGGAAAACGGAGTCAGA
ATGACTCACAAAGCTCCCACCCTTTCCCAGAAGAAAATGTGAGAGTCTGCTTTTATATGG
AAATATCATTGTATATATGTAAAAACGTGGTATGGCCTTAATGCTGCAGTTAAGGATTTG
TTTGGCGACCACCTTAAGCAGCTGTTATGCAATTGCTTCCTTACTGTAATATTTTTACTT
CTCACTGGACTCTTAACCTTAAGCAACCCATAAATTCCCCTTTGTCCCTTATTCTTCCTC
TTTTTTTTTTTTTTGCATGAGATCATAAACGTTATTGGCAGTTATTTTTTGGCTTGTTAA
AAAAAAAACTATTTCTGCAGTTTGAAGATGGAATGTAAAATTTCTGTGATACATGTATAT
CAACAATATATTTATTGAACCATCCATATACACACATCCATGCTGATTCCAACGGAAAAA
AAAATTAAAATTTTCTGAAATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATTCCCGGGTCGACCCACGCGTCCGCTGTAACAACATGCCTGGAAAACGGAGTCAGA
ATGACTCACAAAGCTCCCACCCTTTCCCAGAAGAAAATGTGAGAGTCTGCTTTTATATGG
AAATATCATTGTATATATGTAAAAACGTGGTATGGCCTTAATGCTGCAGTTAAGGATTTG
TTTGGCGACCACCTTAAGCAGCTGTTATGCAATTGCTTCCTTACTGTAATATTTTTACTT
CTCACTGGACTCTTAACCTTAAGCAACCCATAAATTCCCCTTTGTCCCTTATTCTTCCTC
TTTTTTTTTTTTTTGCATGAGATCATAAACGTTATTGGCAGTTATTTTTTGGCTTGTTAA
AAAAAAAACTATTTCTGCAGTTTGAAGATGGAATGTAAAATTTCTGTGATACATGTATAT
CAACAATATATTTATTGAACCATCCATATACACACATCCATGCTGATTCCAACGGAAAAA
AAAATTAAAATTTTCTGAAATTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               378-472, - strand, RNAz p=0.597059

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               378-472, - strand, RNAz p=0.597059

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               36-503, gnl|bosTau2|chr7 (43606449-43605993)
               

               
               36-503, gnl|canFam2|chr4 (60744876-60744476)
               

               
               36-503, gnl|danRer3|chr14 (25707533-25707124)
               

               
               36-503, gnl|dasNov1|scaffold_31596 (46262-45854)
               

               
               36-503, gnl|hg17|chr5 (151171214-151171615)
               

               
               36-503, gnl|Hg17|chr5 (151171704-151171249)
               

               
               36-503, gnl|mm7|chr11 (55461706-55462117)
               

               
               36-503, gnl|Mm7|chr11 (55462207-55461740)
               

               
               36-503, gnl|monDom2|scaffold_6 (54517082-54516716)
               

               
               36-503, gnl|oryCun1|scaffold_191969 (140760-140363)
               

               
               36-503, gnl|panTro1|chr4 (158119383-158119782)
               

               
               36-503, gnl|rheMac2|chr6 (148255196-148255597)
               

               
               36-503, gnl|rn3|chr10 (40927443-40927870)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-503, gnl|bosTau2|chr7 (43606449-43605993)
               

               
               36-503, gnl|canFam2|chr4 (60744876-60744476)
               

               
               36-503, gnl|danRer3|chr14 (25707533-25707124)
               

               
               36-503, gnl|dasNov1|scaffold_31596 (46262-45854)
               

               
               36-503, gnl|hg17|chr5 (151171214-151171615)
               

               
               36-503, gnl|Hg17|chr5 (151171704-151171249)
               

               
               36-503, gnl|mm7|chr11 (55461706-55462117)
               

               
               36-503, gnl|Mm7|chr11 (55462207-55461740)
               

               
               36-503, gnl|monDom2|scaffold_6 (54517082-54516716)
               

               
               36-503, gnl|oryCun1|scaffold_191969 (140760-140363)
               

               
               36-503, gnl|panTro1|chr4 (158119383-158119782)
               

               
               36-503, gnl|rheMac2|chr6 (148255196-148255597)
               

               
               36-503, gnl|rn3|chr10 (40927443-40927870)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	36-503, gnl\|bosTau2\|chr7 (43606449-43605993)
	36-503, gnl\|canFam2\|chr4 (60744876-60744476)
	36-503, gnl\|danRer3\|chr14 (25707533-25707124)
	36-503, gnl\|dasNov1\|scaffold_31596 (46262-45854)
	36-503, gnl\|hg17\|chr5 (151171214-151171615)
	36-503, gnl\|Hg17\|chr5 (151171704-151171249)
	36-503, gnl\|mm7\|chr11 (55461706-55462117)
	36-503, gnl\|Mm7\|chr11 (55462207-55461740)
	36-503, gnl\|monDom2\|scaffold_6 (54517082-54516716)
	36-503, gnl\|oryCun1\|scaffold_191969 (140760-140363)
	36-503, gnl\|panTro1\|chr4 (158119383-158119782)
	36-503, gnl\|rheMac2\|chr6 (148255196-148255597)
	36-503, gnl\|rn3\|chr10 (40927443-40927870)