Non-Coding RNA Search

Ss1.1-Bra1-PBL_13_G08.5

Sequence:


               
               GCGGCGCTGATGTACCGGGAGATTTTTCAAGACGCCTGTTCTCCTGGGCTGAGGGCTCAC
CCCAGACGCTGCTACCCCCGTTGCCCCCCGCCCCTGCCCGAGGCTGCGTGCCCGTGGCCA
CTTATGATCCCCAGTGGGATTTGCCCACACCCAGCCCACTCTGCTCATCTGTGTCACTTT
CTAGCCCCAGGGCCATGTGGGGTCCCACTTACTCTGGATTATACTTCTATAGGCCAGGGT
GGCTGGTGAATCCGGAGCTTCGACCAAAAAAGACTGTCCTTTGTCACAACTCTTAGCTTA
AAGAAAGAAGTGAAAGAAAATTAAATCCATGAAGAAACCAGTGGTGACATGAACTCGGGG
CTCCTTCTGGGCCCGGGACACGGATGCTCCTTCCTGAGCCCACCTCACTCGTAACGGCGG
AGGAAGCTGAGACAGGAAGTTGGGGGCTTGAGGACCGCACCTGCTTCCCCCCCGCCCAGA
GGGGACCCTGACCCGAGCCTGGCTGTGTGGTTAGTGTGTGTGCCTACGAGTCATCTGGGT
GGCGTGTGGCAAATGCAGGTTCCAGGGCCCCGTACAGAACGGATGCAGTGGCTGCGTGGG
CCTAGGAACCTGCATGTACAGATCAAGGCATCCTCTGGCGAGACCAGGAATGCACGTGGG
GAAGGCATGGAGGACAAAAGGTTATACGGGAAGGCTGCGTTCAAAGGGGGCTGCCAGTGC
TGCAGGTAGAACTACTGCACGGACGCAAATGCAGCAGGTACACAAACCACGTATTTAAGA
AATAATGCTGGGTGTGCATGACACACATGCTGCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCGCTGATGTACCGGGAGATTTTTCAAGACGCCTGTTCTCCTGGGCTGAGGGCTCAC
CCCAGACGCTGCTACCCCCGTTGCCCCCCGCCCCTGCCCGAGGCTGCGTGCCCGTGGCCA
CTTATGATCCCCAGTGGGATTTGCCCACACCCAGCCCACTCTGCTCATCTGTGTCACTTT
CTAGCCCCAGGGCCATGTGGGGTCCCACTTACTCTGGATTATACTTCTATAGGCCAGGGT
GGCTGGTGAATCCGGAGCTTCGACCAAAAAAGACTGTCCTTTGTCACAACTCTTAGCTTA
AAGAAAGAAGTGAAAGAAAATTAAATCCATGAAGAAACCAGTGGTGACATGAACTCGGGG
CTCCTTCTGGGCCCGGGACACGGATGCTCCTTCCTGAGCCCACCTCACTCGTAACGGCGG
AGGAAGCTGAGACAGGAAGTTGGGGGCTTGAGGACCGCACCTGCTTCCCCCCCGCCCAGA
GGGGACCCTGACCCGAGCCTGGCTGTGTGGTTAGTGTGTGTGCCTACGAGTCATCTGGGT
GGCGTGTGGCAAATGCAGGTTCCAGGGCCCCGTACAGAACGGATGCAGTGGCTGCGTGGG
CCTAGGAACCTGCATGTACAGATCAAGGCATCCTCTGGCGAGACCAGGAATGCACGTGGG
GAAGGCATGGAGGACAAAAGGTTATACGGGAAGGCTGCGTTCAAAGGGGGCTGCCAGTGC
TGCAGGTAGAACTACTGCACGGACGCAAATGCAGCAGGTACACAAACCACGTATTTAAGA
AATAATGCTGGGTGTGCATGACACACATGCTGCGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               504-653, + strand, RNAz p=1

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               504-653, + strand, RNAz p=1

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               537-639, + strand, RNAmicro p=1
               

               
               554-645, - strand, RNAmicro p=0.999721

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               537-639, + strand, RNAmicro p=1
               

               
               554-645, - strand, RNAmicro p=0.999721

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               7-490, gnl|bosTau2|chr25 (9018350-9017882)
               

               
               7-490, gnl|Hg17|chr16 (10769557-10769124)
               


               
               504-712, gnl|bosTau2|chr25 (9017516-9017295)
               

               
               504-712, gnl|Hg17|chr16 (10769094-10768910)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-490, gnl|bosTau2|chr25 (9018350-9017882)
               

               
               7-490, gnl|Hg17|chr16 (10769557-10769124)
               


               
               504-712, gnl|bosTau2|chr25 (9017516-9017295)
               

               
               504-712, gnl|Hg17|chr16 (10769094-10768910)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	537-639, + strand, RNAmicro p=1
	554-645, - strand, RNAmicro p=0.999721

	7-490, gnl\|bosTau2\|chr25 (9018350-9017882)
	7-490, gnl\|Hg17\|chr16 (10769557-10769124)

	504-712, gnl\|bosTau2\|chr25 (9017516-9017295)
	504-712, gnl\|Hg17\|chr16 (10769094-10768910)