Non-Coding RNA Search

Ss1.1-Bra1-PBL_15_A02.5

Sequence:


               
               CCAGCTGAATTACCTGGAATGTAGTGGGAGCACTTGCTTTCCCGGGGTATCCCTGGTCAT
CTCTTCAGGGAGGCAGTCCTATCTGGGCCTTCTCTCAGGGACGGGCTCCAGAGCTTGGGG
CAGCCCATTGCCTACCCCAGGCATCTGCCGAGTCTCTGAGGTGGAGGGGAGGGGTTGGAT
CTCCCCAGCTTGTCCCTGGTGAGAAGCAAGGCTAGGTTTTCTTCCACATGCTTCAGAATG
CCGAGGATGCTAGGGACCCAGAAACCCCCTTGGAGGAGCCTTGTGGAGGTGCTAGGCCCA
GTCACTCTGCTTGCTCTGTCACCCCCTCTTGCCATCCTGTCAACACGTGCTGGAAGGGCC
TTACTCTGGGGCCAGGAGGCAGTCACTAAGGTATGGAGACATCCTGCGTTTGAGAAACAT
GAGAGAGGGCTCAGCAGCTTCTCTGCATCGAGCACAGTCCCCCCAGCCCCGCCCCGCCCC
AGGCACTGCACGGCCTGTTTGGGGGCCAGTCGCCTCATTGCTCACCTATTGTCCACGAGT
CCTTGGCCTCCACCAAGCATGGTGGCTGTTGTGCGCCTGCCTTAGTGACTCAGCGGTTTT
GTGAGGAGCAGAGCGTGTATGTTTTTTGGCTCGAAAACTATACTCTTCAGTGTAACAGAC
CAATAAACACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCTGAATTACCTGGAATGTAGTGGGAGCACTTGCTTTCCCGGGGTATCCCTGGTCAT
CTCTTCAGGGAGGCAGTCCTATCTGGGCCTTCTCTCAGGGACGGGCTCCAGAGCTTGGGG
CAGCCCATTGCCTACCCCAGGCATCTGCCGAGTCTCTGAGGTGGAGGGGAGGGGTTGGAT
CTCCCCAGCTTGTCCCTGGTGAGAAGCAAGGCTAGGTTTTCTTCCACATGCTTCAGAATG
CCGAGGATGCTAGGGACCCAGAAACCCCCTTGGAGGAGCCTTGTGGAGGTGCTAGGCCCA
GTCACTCTGCTTGCTCTGTCACCCCCTCTTGCCATCCTGTCAACACGTGCTGGAAGGGCC
TTACTCTGGGGCCAGGAGGCAGTCACTAAGGTATGGAGACATCCTGCGTTTGAGAAACAT
GAGAGAGGGCTCAGCAGCTTCTCTGCATCGAGCACAGTCCCCCCAGCCCCGCCCCGCCCC
AGGCACTGCACGGCCTGTTTGGGGGCCAGTCGCCTCATTGCTCACCTATTGTCCACGAGT
CCTTGGCCTCCACCAAGCATGGTGGCTGTTGTGCGCCTGCCTTAGTGACTCAGCGGTTTT
GTGAGGAGCAGAGCGTGTATGTTTTTTGGCTCGAAAACTATACTCTTCAGTGTAACAGAC
CAATAAACACAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-268, + strand, RNAz p=0.997847

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-268, + strand, RNAz p=0.997847

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               89-168, + strand, RNAmicro p=0.999763
               

               
               178-304, - strand, RNAmicro p=0.9854

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               89-168, + strand, RNAmicro p=0.999763
               

               
               178-304, - strand, RNAmicro p=0.9854

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014853, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014853, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-296, gnl|bosTau2|chr19 (17880427-17880720)
               

               
               1-296, gnl|Hg17|chr17 (2230349-2230652)
               

               
               1-296, gnl|Mm7|chr11 (74931614-74931315)
               


               
               383-672, gnl|bosTau2|chr19 (17880867-17881144)
               

               
               383-672, gnl|canFam2|chr9 (49791238-49791772)
               

               
               383-672, gnl|dasNov1|scaffold_2621 (59656-60107)
               

               
               383-672, gnl|echTel1|scaffold_308405 (870-380)
               

               
               383-672, gnl|hg17|chr17 (2230600-2231113)
               

               
               383-672, gnl|Hg17|chr17 (2230793-2231086)
               

               
               383-672, gnl|loxAfr1|scaffold_23622 (24261-24805)
               

               
               383-672, gnl|mm7|chr11 (74931364-74930808)
               

               
               383-672, gnl|Mm7|chr11 (74931176-74930850)
               

               
               383-672, gnl|monDom2|scaffold_86 (3549145-3549749)
               

               
               383-672, gnl|oryCun1|scaffold_206566 (36678-36158)
               

               
               383-672, gnl|panTro1|chr19 (2415106-2415618)
               

               
               383-672, gnl|rheMac2|chr16 (2174610-2175120)
               

               
               383-672, gnl|rn3|chr10 (62179317-62178773)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-296, gnl|bosTau2|chr19 (17880427-17880720)
               

               
               1-296, gnl|Hg17|chr17 (2230349-2230652)
               

               
               1-296, gnl|Mm7|chr11 (74931614-74931315)
               


               
               383-672, gnl|bosTau2|chr19 (17880867-17881144)
               

               
               383-672, gnl|canFam2|chr9 (49791238-49791772)
               

               
               383-672, gnl|dasNov1|scaffold_2621 (59656-60107)
               

               
               383-672, gnl|echTel1|scaffold_308405 (870-380)
               

               
               383-672, gnl|hg17|chr17 (2230600-2231113)
               

               
               383-672, gnl|Hg17|chr17 (2230793-2231086)
               

               
               383-672, gnl|loxAfr1|scaffold_23622 (24261-24805)
               

               
               383-672, gnl|mm7|chr11 (74931364-74930808)
               

               
               383-672, gnl|Mm7|chr11 (74931176-74930850)
               

               
               383-672, gnl|monDom2|scaffold_86 (3549145-3549749)
               

               
               383-672, gnl|oryCun1|scaffold_206566 (36678-36158)
               

               
               383-672, gnl|panTro1|chr19 (2415106-2415618)
               

               
               383-672, gnl|rheMac2|chr16 (2174610-2175120)
               

               
               383-672, gnl|rn3|chr10 (62179317-62178773)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	89-168, + strand, RNAmicro p=0.999763
	178-304, - strand, RNAmicro p=0.9854

	1-296, gnl\|bosTau2\|chr19 (17880427-17880720)
	1-296, gnl\|Hg17\|chr17 (2230349-2230652)
	1-296, gnl\|Mm7\|chr11 (74931614-74931315)

	383-672, gnl\|bosTau2\|chr19 (17880867-17881144)
	383-672, gnl\|canFam2\|chr9 (49791238-49791772)
	383-672, gnl\|dasNov1\|scaffold_2621 (59656-60107)
	383-672, gnl\|echTel1\|scaffold_308405 (870-380)
	383-672, gnl\|hg17\|chr17 (2230600-2231113)
	383-672, gnl\|Hg17\|chr17 (2230793-2231086)
	383-672, gnl\|loxAfr1\|scaffold_23622 (24261-24805)
	383-672, gnl\|mm7\|chr11 (74931364-74930808)
	383-672, gnl\|Mm7\|chr11 (74931176-74930850)
	383-672, gnl\|monDom2\|scaffold_86 (3549145-3549749)
	383-672, gnl\|oryCun1\|scaffold_206566 (36678-36158)
	383-672, gnl\|panTro1\|chr19 (2415106-2415618)
	383-672, gnl\|rheMac2\|chr16 (2174610-2175120)
	383-672, gnl\|rn3\|chr10 (62179317-62178773)