Non-Coding RNA Search

Ss1.1-Bra1-PBL_4_D02.5

Sequence:


               
               AGTGTCTACCTACCTCTGATCAGCAGTGGCCACATGCCACCCTGTGAAGACTTCAGAAGA
CTGGGAAGCACTGGGGAGGGAGGCAGGCCACACTGGAATTGGAAGTCTTTACCCACTTGT
ACATGGGGCTTGAGTGCCTGTGACTTGTGGGTTTGGGGCTTCCCCAAACCACATCCCTGG
GTAGAGGGCGGGGGGTGGGGTGGGGGGGTGGGAAATACCACCCAGAGAGACCCTGATCGC
TTCCTCTACAAGATCCTCAGTCTGGGGTTTCTTGAGGTGGTTCCTCTCCTATACAGCTCT
CTCTCTCTCCATCACAAGCAGCATATGGTCCATTTTTGTCTCCAAATCTACTTTTAATCT
AAATGGAAGTTGGGTTCTGCATTTTTACCAGAGGGTAATATTCAAGTTTTTTATTTACAC
ACCTGTAATCAAAATGCAATACTATAAACTTTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTCTACCTACCTCTGATCAGCAGTGGCCACATGCCACCCTGTGAAGACTTCAGAAGA
CTGGGAAGCACTGGGGAGGGAGGCAGGCCACACTGGAATTGGAAGTCTTTACCCACTTGT
ACATGGGGCTTGAGTGCCTGTGACTTGTGGGTTTGGGGCTTCCCCAAACCACATCCCTGG
GTAGAGGGCGGGGGGTGGGGTGGGGGGGTGGGAAATACCACCCAGAGAGACCCTGATCGC
TTCCTCTACAAGATCCTCAGTCTGGGGTTTCTTGAGGTGGTTCCTCTCCTATACAGCTCT
CTCTCTCTCCATCACAAGCAGCATATGGTCCATTTTTGTCTCCAAATCTACTTTTAATCT
AAATGGAAGTTGGGTTCTGCATTTTTACCAGAGGGTAATATTCAAGTTTTTTATTTACAC
ACCTGTAATCAAAATGCAATACTATAAACTTTTAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               85-203, + strand, RNAz p=0.99712

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               85-203, + strand, RNAz p=0.99712

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-454, gnl|bosTau2|chr17 (43016440-43016007)
               

               
               5-454, gnl|Hg17|chr22 (29646108-29645688)
               

               
               5-454, gnl|Mm7|chr11 (3642091-3642471)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-454, gnl|bosTau2|chr17 (43016440-43016007)
               

               
               5-454, gnl|Hg17|chr22 (29646108-29645688)
               

               
               5-454, gnl|Mm7|chr11 (3642091-3642471)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ecc (0.23007)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               fhi (0.169578)

	5-454, gnl\|bosTau2\|chr17 (43016440-43016007)
	5-454, gnl\|Hg17\|chr22 (29646108-29645688)
	5-454, gnl\|Mm7\|chr11 (3642091-3642471)