Non-Coding RNA Search

Ss1.1-Bra1-PBL_5_H01.5

Sequence:


               
               CCTGGCCGCTGACCCGTTGCATGGCCCTGGCCGGGTCACAGCCTCTCTGAGCCTCAGCTG
CCGCCTCTGTAAAATGATTGTTTTGAGGGAGCAGACTTTCTGACTTTCGAGAGTTCTTTG
GTGGTGGCTGCCATGGGGTGGTGTGGTCAGGATGCCAGGCCGCCCCTGTCTGTACCTGCC
TTGCAGCGGGACTCTGGGGAGTCACAGTTCTCCCCAGTCACTGACCTCATGGACCCCTTC
TGCCGGCGTGGAGTGAGGCGGGCGGGCAGTGGCCCCATCCCATCTGGGGTCTCATCTTGG
AGGCAAGGCAAGTTCTTACACGCAGGGGCTGTGTGGCCTGAGGGTCAGGGAGAGGAAGCC
ATCCGTCCCATTGTCTCTGTTAGTACGAGGGTAGTTGCTGCCTCCTTTGTGAACCTGGGT
CACCGTGATTGTGAATAAAGGTGATTTCGTACCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGCCGCTGACCCGTTGCATGGCCCTGGCCGGGTCACAGCCTCTCTGAGCCTCAGCTG
CCGCCTCTGTAAAATGATTGTTTTGAGGGAGCAGACTTTCTGACTTTCGAGAGTTCTTTG
GTGGTGGCTGCCATGGGGTGGTGTGGTCAGGATGCCAGGCCGCCCCTGTCTGTACCTGCC
TTGCAGCGGGACTCTGGGGAGTCACAGTTCTCCCCAGTCACTGACCTCATGGACCCCTTC
TGCCGGCGTGGAGTGAGGCGGGCGGGCAGTGGCCCCATCCCATCTGGGGTCTCATCTTGG
AGGCAAGGCAAGTTCTTACACGCAGGGGCTGTGTGGCCTGAGGGTCAGGGAGAGGAAGCC
ATCCGTCCCATTGTCTCTGTTAGTACGAGGGTAGTTGCTGCCTCCTTTGTGAACCTGGGT
CACCGTGATTGTGAATAAAGGTGATTTCGTACCAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               120-454, gnl|bosTau2|chr26 (15832837-15832491)
               

               
               120-454, gnl|Hg17|chr10 (105342008-105342293)
               

               
               120-454, gnl|Mm7|chr19 (47159627-47159932)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-454, gnl|bosTau2|chr26 (15832837-15832491)
               

               
               120-454, gnl|Hg17|chr10 (105342008-105342293)
               

               
               120-454, gnl|Mm7|chr19 (47159627-47159932)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               bfe (0.149858)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               bfe (0.149858)

	120-454, gnl\|bosTau2\|chr26 (15832837-15832491)
	120-454, gnl\|Hg17\|chr10 (105342008-105342293)
	120-454, gnl\|Mm7\|chr19 (47159627-47159932)