Non-Coding RNA Search

Ss1.1-Bra1-PBL_6_B09.5

Sequence:


               
               GGGCCCCAGTCTTTTGCGTGGGTACCTCAGGGACTTCAGGATCTGGAAGGTAGACTGATT
GGATTTCTCATCCTGGTCAAAGTGCCCATCCCCAGCTCCCACCTCCTCCTCTTGCTTTAG
AACAGTTTCATGTTAGATGGAAATTTATTATGAGTTTTGTATGAAAAAAGATTCAACTAC
TTTAAAAAAGTTTGAAAATTACAGGACCAGATGATCTCAAAAGTCCTTCCCACCATTATG
AACTCATCCTTGCTTTCTTGTTAACCTCAGTCCCTATGCTTCATCATTGCCCATGTCTGG
AGCTGCAGCCTTAAATTAGCCTCTGCCTAGTGTATGAGTCTCATCCATAGCTCTGGTTCC
TCTTGAAGAGAGCGAGGGGGGAGGGGCACTANGCTGTCCCTTTGTTCCTGGGTACCCAGG
GTCCCTTGCTTCTGTTTTCTATACTACAGGTTTCCAGCTTCCTTCCACTCAGGCTGGATT
CTGGGGCCTGATCGGCTCAGAGATGGTAGTGGGGTAGAGTCCCATAGAGCTAGGCTTTCC
ACCCACTGCATAGGAACCGTCAGAGAATTTAGGAGTGGTTTAGAAGGTAGAGTGTTAGAA
GCAAAGTACAAAATCTCTAGGAAACAAATCTAATGACTCTCCATTATAATGAGTCTTCAG
AGTTCAGGGACCTAGTCTGACTGATTCTTAGTGGTTCTGATGGTCAGAATACAGAAACAG
GGGCCTGGCTTCCTGAACTATTTGCTGAAACCCTAGTTGAGAGGCTTTCCCATATTGCCC
AGACATGAGCCCTCTCACCAAAGATCAGCTGTCCACCTAGAAACACAGGGATGGGAGTCA
TGAGTAAGAAAGGGAGCATTAAAGATGTCACAAGTTTCATCCATAGAGAAGTGCATAGAT
ATGTGGTGGAATCCTAATTGCTTTCAAATGGGATGTAATATGGTTTGGAGAGGGAGAAGG
CTTTCTGATAAGAGGGGTGCAGATAGGGTCTGGCGGAAGGCAGAAAGCAGGAAGTGGGAT
GCCACCCTGCATTTTGAGGGGTCCTCATTCATCTCACCTTTGTTAATAACTTGACTCCTC
CTCCTTCCTCCACCACCCCCTTTCTAATGCAAAGTCACTACGGTCTGTAGTGGCAGAGGG
AGGAGGGCCACTTATATCAAGACGGGTACTTTAATAAAGATGGTATTTATTCACTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCCAGTCTTTTGCGTGGGTACCTCAGGGACTTCAGGATCTGGAAGGTAGACTGATT
GGATTTCTCATCCTGGTCAAAGTGCCCATCCCCAGCTCCCACCTCCTCCTCTTGCTTTAG
AACAGTTTCATGTTAGATGGAAATTTATTATGAGTTTTGTATGAAAAAAGATTCAACTAC
TTTAAAAAAGTTTGAAAATTACAGGACCAGATGATCTCAAAAGTCCTTCCCACCATTATG
AACTCATCCTTGCTTTCTTGTTAACCTCAGTCCCTATGCTTCATCATTGCCCATGTCTGG
AGCTGCAGCCTTAAATTAGCCTCTGCCTAGTGTATGAGTCTCATCCATAGCTCTGGTTCC
TCTTGAAGAGAGCGAGGGGGGAGGGGCACTANGCTGTCCCTTTGTTCCTGGGTACCCAGG
GTCCCTTGCTTCTGTTTTCTATACTACAGGTTTCCAGCTTCCTTCCACTCAGGCTGGATT
CTGGGGCCTGATCGGCTCAGAGATGGTAGTGGGGTAGAGTCCCATAGAGCTAGGCTTTCC
ACCCACTGCATAGGAACCGTCAGAGAATTTAGGAGTGGTTTAGAAGGTAGAGTGTTAGAA
GCAAAGTACAAAATCTCTAGGAAACAAATCTAATGACTCTCCATTATAATGAGTCTTCAG
AGTTCAGGGACCTAGTCTGACTGATTCTTAGTGGTTCTGATGGTCAGAATACAGAAACAG
GGGCCTGGCTTCCTGAACTATTTGCTGAAACCCTAGTTGAGAGGCTTTCCCATATTGCCC
AGACATGAGCCCTCTCACCAAAGATCAGCTGTCCACCTAGAAACACAGGGATGGGAGTCA
TGAGTAAGAAAGGGAGCATTAAAGATGTCACAAGTTTCATCCATAGAGAAGTGCATAGAT
ATGTGGTGGAATCCTAATTGCTTTCAAATGGGATGTAATATGGTTTGGAGAGGGAGAAGG
CTTTCTGATAAGAGGGGTGCAGATAGGGTCTGGCGGAAGGCAGAAAGCAGGAAGTGGGAT
GCCACCCTGCATTTTGAGGGGTCCTCATTCATCTCACCTTTGTTAATAACTTGACTCCTC
CTCCTTCCTCCACCACCCCCTTTCTAATGCAAAGTCACTACGGTCTGTAGTGGCAGAGGG
AGGAGGGCCACTTATATCAAGACGGGTACTTTAATAAAGATGGTATTTATTCACTCAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               639-755, + strand, RNAz p=0.795222
               

               
               990-1148, - strand, RNAz p=0.997019

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               639-755, + strand, RNAz p=0.795222
               

               
               990-1148, - strand, RNAz p=0.997019

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_153708, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_153708, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-360, gnl|bosTau2|chr1 (49991812-49992182)
               

               
               1-360, gnl|Hg17|chr3 (188400765-188401151)
               

               
               1-360, gnl|Mm7|chr16 (23090518-23090975)
               


               
               503-1197, gnl|bosTau2|chr1 (49992309-49992995)
               

               
               503-1197, gnl|Hg17|chr3 (188401280-188401955)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-360, gnl|bosTau2|chr1 (49991812-49992182)
               

               
               1-360, gnl|Hg17|chr3 (188400765-188401151)
               

               
               1-360, gnl|Mm7|chr16 (23090518-23090975)
               


               
               503-1197, gnl|bosTau2|chr1 (49992309-49992995)
               

               
               503-1197, gnl|Hg17|chr3 (188401280-188401955)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	639-755, + strand, RNAz p=0.795222
	990-1148, - strand, RNAz p=0.997019

	1-360, gnl\|bosTau2\|chr1 (49991812-49992182)
	1-360, gnl\|Hg17\|chr3 (188400765-188401151)
	1-360, gnl\|Mm7\|chr16 (23090518-23090975)

	503-1197, gnl\|bosTau2\|chr1 (49992309-49992995)
	503-1197, gnl\|Hg17\|chr3 (188401280-188401955)