Non-Coding RNA Search

Ss1.1-Bra1-PBL_9_A05.5

Sequence:


               
               CCCGACAAGTCGTGCGGGGAGAAATCCGGCAACAGCCGCCGAAATCTGAAGATCTCGCGC
TCAGGCCGCTTTAAGGAGAAGAGGAAAGTGCGCGCCACCCTGCTCCCCGAGGGAGTCAGG
TCCTCGGAGGAGGCGGACTTCCCTGGTGACCCCCACGACGACAAGCAATAGCCCGAGCGC
TCCGGGGCTGCCTCTCCTCCCACGAGGCCTCCCCAGCCCCCAGTTCGAAACCTGCCCCTG
GACTTGGTGCCTTACCCCACCAAAGTCAGAATATTTGCCCAAGGCCTCCAGGTTTTGGAG
ACTGAAGTGACAGTCGAGTATTCTATAGTTCACAACTCAAAGATGCATTCAATATTTATT
CTTGCTAAGAGAAGATACCACAGAGGAAGCTGGCATATTTTTTTTTTTTTTTTTTTCCCT
AAAACACTTACAGGGTCTTCCTTGCATCCCTCATGGGAAGGAGAAGGGTACTTCTCTAAG
AGACCTTGGCGCAAGTGGAATTGCGCAGCCCCTCCAACGAGGGAGGGCACGCTCTGATTC
AGGACTTGCCATTGGAAAGCAAATCACAGTGCTGTCTTTAATGCCTGAGAAATGCACTTT
AGGAGTACTTTGGTAGACTTACACCTTAAGTGAAGGTATGGGAGAGAGCAGGAAGCCTTC
TCAAGTAGAAGCATTTTAAGTAAGGCAGGATTGCTTTTAATGTTGAATTACAAAACTGTA
CTGCTCATTTTAGTGTGGACTATTAAAACTGTTGCACTGTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGACAAGTCGTGCGGGGAGAAATCCGGCAACAGCCGCCGAAATCTGAAGATCTCGCGC
TCAGGCCGCTTTAAGGAGAAGAGGAAAGTGCGCGCCACCCTGCTCCCCGAGGGAGTCAGG
TCCTCGGAGGAGGCGGACTTCCCTGGTGACCCCCACGACGACAAGCAATAGCCCGAGCGC
TCCGGGGCTGCCTCTCCTCCCACGAGGCCTCCCCAGCCCCCAGTTCGAAACCTGCCCCTG
GACTTGGTGCCTTACCCCACCAAAGTCAGAATATTTGCCCAAGGCCTCCAGGTTTTGGAG
ACTGAAGTGACAGTCGAGTATTCTATAGTTCACAACTCAAAGATGCATTCAATATTTATT
CTTGCTAAGAGAAGATACCACAGAGGAAGCTGGCATATTTTTTTTTTTTTTTTTTTCCCT
AAAACACTTACAGGGTCTTCCTTGCATCCCTCATGGGAAGGAGAAGGGTACTTCTCTAAG
AGACCTTGGCGCAAGTGGAATTGCGCAGCCCCTCCAACGAGGGAGGGCACGCTCTGATTC
AGGACTTGCCATTGGAAAGCAAATCACAGTGCTGTCTTTAATGCCTGAGAAATGCACTTT
AGGAGTACTTTGGTAGACTTACACCTTAAGTGAAGGTATGGGAGAGAGCAGGAAGCCTTC
TCAAGTAGAAGCATTTTAAGTAAGGCAGGATTGCTTTTAATGTTGAATTACAAAACTGTA
CTGCTCATTTTAGTGTGGACTATTAAAACTGTTGCACTGTAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-762, gnl|bosTau2|chr4 (37720660-37721430)
               

               
               4-762, gnl|Hg17|chr7 (29379408-29380149)
               

               
               4-762, gnl|Mm7|chr6 (54292830-54293565)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-762, gnl|bosTau2|chr4 (37720660-37721430)
               

               
               4-762, gnl|Hg17|chr7 (29379408-29380149)
               

               
               4-762, gnl|Mm7|chr6 (54292830-54293565)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)

	4-762, gnl\|bosTau2\|chr4 (37720660-37721430)
	4-762, gnl\|Hg17\|chr7 (29379408-29380149)
	4-762, gnl\|Mm7\|chr6 (54292830-54293565)

	pro (0.512033)
	ova (0.258264)
	tes (0.207814)
	cmu (0.186393)
	sin (0.174948)
	mga (0.160205)
	hyp (0.142837)
	cov (0.132153)
	ese (0.126502)
	tra (0.123092)
	jej (0.0989218)