Ss1.1-Bra1-olf_011_C11.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGATGCCACCAACAGAGAGTGGTGGTGGGGCCGCGTCGCAGATGGCGAGGGCTGGTTT CCAGCAAGCTTCGTGCGGCTGCGGGTGAATCAGGACGAGCCAGCAGACGATGAGACGCTG GGGACCGGGCACGGTGGGGCTGGGGATGGTGGAGCCGAAGCTCAGAGCAGCAAGGACCAG ATGCGGACCAACGTCATCAACGAGATCCTCAGCACAGAGCGGGACTACATCAAGCACCTG CGTGACATCTGCGAGGGCTACATCAGGCAGTGTCGCAAGCGCGCGGACATGTTCAGCGAG GAACAGCTGCGCACCATCTTTGGGAACATCGAGGACATCTACCGGTGCCAGAAGGCCTTC GTGAAGGCTCTGGAGCAGAAGTTCAACCGGGAACGGCCTCACCTGAGCGAGCTGGGCGCC TGCTTCCTGGAGCACCAAGCGAACTTCCAGATCTACTCAGAGTACTGCAACAACCACCCC AACGCCTGCGTGGAGCTCTCCCGCCTCGCCAAGCTTAGCAAGTATGTGTACTTCTTTGAG GCCTGCCGGCTGCTACAGAAGATGATTGACATCTCCCTGGACGGCTTCCTGCTGACCCCG GTGCAGAAGATCTGCAAGTACCCGCTGCAGCTGGCTGAGCTGCTCAAGTACACACACCCC CAGCACAGGGATTTCAAGGACGTGGAAGCTGCCTTACATGCCATGAAGAATGTGGCCCAA CTCATCAATGAACGGAAACGGAGGCTCGAAAACATCGACAAGATCGCTCAGTGGCAGAGT TCCATAGAGGACTGGGAGGGGGAAGATCTCCTGGTCAGGAGCTCGGAACTCATCCACTCG GGGGAGCTGACTCGTGTCACACAGCCACAAGCCAAGAGCCAGCAGAGGATGTTTTTTCTC TTTGACCACCAGCTCATCTACTGTAAGAAGGACCTTCTCCGCCGGGACGTGCTCTACTAC AAGGGCCGAGTGGACATGGATGGCCTGAAGGTGGTAGACCTGGAGGATGGGAAGGACAGA GAGCTCCACGTGAGCATCAGGAATGCCTTCCGGCTGCGCTGCAGCCCCACTGGGGAGAGC CACCTGCTGTGCGCCAAGAAGCCAGAGCAGAAGCAGCGCTGGCTCAAGGCCTTCGCCAGG GAGCGGGAGCAGGTGCGGCTGGACCAGGAGACAGGCTTCTCCATCACCCAGCTGCAGAGG AAGCAGGCCATGCTGAATGCCAGCAAGCAGCAGGCCATCGGGAAGCCCAAAGCCCTCGGC CGGCCCTACTACCTTACGCGCCAGAAGCACCCGGCCCTGCCCACCAGCCTGCCCCAGCAG CAGGTCTTGGTGCTGGCCGAGCCCAAGCGGAAGCCGTCCACCTTCTGGCACAGCATCAGC CGGCTGGCGCCCTTCCGCAAGTGAGCCCACGCACCCGGCCCCATGGCACCATCTGGATCT GCGCTGCCGGCAGCGTCCAGCTTCTCCATGAGGCTCACCACACCCAGGCCTCCTCTGCCT GTTGTGCAAACTGGAAGTTAGTGGGGCTGAGCATGGGAGGTGCTCAGTGCCCCCATTCTC GGTTTCTTCCCTGCCACTGGGGCGCTGAAGACACCTGCCGGCTGGAGAGGCAGGCCCCCA GCACGTGAACCTCCCACCACTCTCCAGGCCTGTGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGATGCCACCAACAGAGAGTGGTGGTGGGGCCGCGTCGCAGATGGCGAGGGCTGGTTT CCAGCAAGCTTCGTGCGGCTGCGGGTGAATCAGGACGAGCCAGCAGACGATGAGACGCTG GGGACCGGGCACGGTGGGGCTGGGGATGGTGGAGCCGAAGCTCAGAGCAGCAAGGACCAG ATGCGGACCAACGTCATCAACGAGATCCTCAGCACAGAGCGGGACTACATCAAGCACCTG CGTGACATCTGCGAGGGCTACATCAGGCAGTGTCGCAAGCGCGCGGACATGTTCAGCGAG GAACAGCTGCGCACCATCTTTGGGAACATCGAGGACATCTACCGGTGCCAGAAGGCCTTC GTGAAGGCTCTGGAGCAGAAGTTCAACCGGGAACGGCCTCACCTGAGCGAGCTGGGCGCC TGCTTCCTGGAGCACCAAGCGAACTTCCAGATCTACTCAGAGTACTGCAACAACCACCCC AACGCCTGCGTGGAGCTCTCCCGCCTCGCCAAGCTTAGCAAGTATGTGTACTTCTTTGAG GCCTGCCGGCTGCTACAGAAGATGATTGACATCTCCCTGGACGGCTTCCTGCTGACCCCG GTGCAGAAGATCTGCAAGTACCCGCTGCAGCTGGCTGAGCTGCTCAAGTACACACACCCC CAGCACAGGGATTTCAAGGACGTGGAAGCTGCCTTACATGCCATGAAGAATGTGGCCCAA CTCATCAATGAACGGAAACGGAGGCTCGAAAACATCGACAAGATCGCTCAGTGGCAGAGT TCCATAGAGGACTGGGAGGGGGAAGATCTCCTGGTCAGGAGCTCGGAACTCATCCACTCG GGGGAGCTGACTCGTGTCACACAGCCACAAGCCAAGAGCCAGCAGAGGATGTTTTTTCTC TTTGACCACCAGCTCATCTACTGTAAGAAGGACCTTCTCCGCCGGGACGTGCTCTACTAC AAGGGCCGAGTGGACATGGATGGCCTGAAGGTGGTAGACCTGGAGGATGGGAAGGACAGA GAGCTCCACGTGAGCATCAGGAATGCCTTCCGGCTGCGCTGCAGCCCCACTGGGGAGAGC CACCTGCTGTGCGCCAAGAAGCCAGAGCAGAAGCAGCGCTGGCTCAAGGCCTTCGCCAGG GAGCGGGAGCAGGTGCGGCTGGACCAGGAGACAGGCTTCTCCATCACCCAGCTGCAGAGG AAGCAGGCCATGCTGAATGCCAGCAAGCAGCAGGCCATCGGGAAGCCCAAAGCCCTCGGC CGGCCCTACTACCTTACGCGCCAGAAGCACCCGGCCCTGCCCACCAGCCTGCCCCAGCAG CAGGTCTTGGTGCTGGCCGAGCCCAAGCGGAAGCCGTCCACCTTCTGGCACAGCATCAGC CGGCTGGCGCCCTTCCGCAAGTGAGCCCACGCACCCGGCCCCATGGCACCATCTGGATCT GCGCTGCCGGCAGCGTCCAGCTTCTCCATGAGGCTCACCACACCCAGGCCTCCTCTGCCT GTTGTGCAAACTGGAAGTTAGTGGGGCTGAGCATGGGAGGTGCTCAGTGCCCCCATTCTC GGTTTCTTCCCTGCCACTGGGGCGCTGAAGACACCTGCCGGCTGGAGAGGCAGGCCCCCA GCACGTGAACCTCCCACCACTCTCCAGGCCTGTGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 550-669, - strand, RNAz p=0.853544 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 550-669, - strand, RNAz p=0.853544 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 74-256, gnl|bosTau2|chr2 (452664-452849) | |
| 74-256, gnl|Hg17|chr2 (131631316-131631498) | |
| 74-256, gnl|Mm7|chr1 (35029175-35029360) | |
| 432-669, gnl|bosTau2|chr12 (19075125-19075362) | |
| 432-669, gnl|canFam2|chr25 (17704645-17704841) | |
| 432-669, gnl|danRer3|chr2 (7176903-7176715) | |
| 432-669, gnl|dasNov1|scaffold_79412 (9286-9482) | |
| 432-669, gnl|echTel1|scaffold_175392 (6004-6200) | |
| 432-669, gnl|fr1|chrUn (57851586-57851775) | |
| 432-669, gnl|galGal2|chr1 (169377266-169377458) | |
| 432-669, gnl|hg17|chr13 (23762769-23762965) | |
| 432-669, gnl|Hg17|chr13 (23762786-23763023) | |
| 432-669, gnl|loxAfr1|scaffold_9415 (46633-46437) | |
| 432-669, gnl|mm7|chr14 (55619288-55619483) | |
| 432-669, gnl|Mm7|chr14 (55619304-55619541) | |
| 432-669, gnl|monDom2|scaffold_15 (32827575-32827379) | |
| 432-669, gnl|oryCun1|scaffold_183026 (12864-12681) | |
| 432-669, gnl|panTro1|chr14 (22955353-22955549) | |
| 432-669, gnl|rheMac2|chr17 (4586548-4586744) | |
| 432-669, gnl|rn3|chr15 (39856729-39856922) | |
| 432-669, gnl|tetNig1|chr6 (2652796-2652985) | |
| 432-669, gnl|xenTro1|scaffold_417 (810366-810181) | |
| 797-1168, gnl|bosTau2|chr12 (19079669-19080037) | |
| 797-1168, gnl|Hg17|chr13 (23769499-23769867) | |
| 797-1168, gnl|Mm7|chr14 (55623883-55624251) | |
| 1251-1656, gnl|bosTau2|chr2 (459393-459787) | |
| 1251-1656, gnl|Hg17|chr2 (131637341-131637766) | |
| 1251-1656, gnl|Mm7|chr1 (35034900-35035260) | |
| 1298-1404, gnl|bosTau2|chr12 (19083577-19083683) | |
| 1298-1404, gnl|canFam2|chr25 (17714545-17714662) | |
| 1298-1404, gnl|danRer3|chr5 (8374785-8374930) | |
| 1298-1404, gnl|dasNov1|scaffold_50254 (3840-3723) | |
| 1298-1404, gnl|echTel1|scaffold_156550 (4706-4590) | |
| 1298-1404, gnl|fr1|chrUn (57852873-57852992) | |
| 1298-1404, gnl|galGal2|chr1 (169384494-169384611) | |
| 1298-1404, gnl|hg17|chr13 (23774796-23774913) | |
| 1298-1404, gnl|Hg17|chr13 (23774805-23774911) | |
| 1298-1404, gnl|loxAfr1|scaffold_9415 (32123-32006) | |
| 1298-1404, gnl|mm7|chr14 (55628609-55628726) | |
| 1298-1404, gnl|Mm7|chr14 (55628618-55628724) | |
| 1298-1404, gnl|monDom2|scaffold_15 (32805855-32805738) | |
| 1298-1404, gnl|oryCun1|scaffold_180741 (7460-7343) | |
| 1298-1404, gnl|panTro1|chr14 (22967033-22967150) | |
| 1298-1404, gnl|rheMac2|chr17 (4598888-4599005) | |
| 1298-1404, gnl|rn3|chr15 (39864799-39864916) | |
| 1298-1404, gnl|tetNig1|chr6 (2654055-2654174) | |
| 1298-1404, gnl|xenTro1|scaffold_382 (262920-263037) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 74-256, gnl|bosTau2|chr2 (452664-452849) | |
| 74-256, gnl|Hg17|chr2 (131631316-131631498) | |
| 74-256, gnl|Mm7|chr1 (35029175-35029360) | |
| 432-669, gnl|bosTau2|chr12 (19075125-19075362) | |
| 432-669, gnl|canFam2|chr25 (17704645-17704841) | |
| 432-669, gnl|danRer3|chr2 (7176903-7176715) | |
| 432-669, gnl|dasNov1|scaffold_79412 (9286-9482) | |
| 432-669, gnl|echTel1|scaffold_175392 (6004-6200) | |
| 432-669, gnl|fr1|chrUn (57851586-57851775) | |
| 432-669, gnl|galGal2|chr1 (169377266-169377458) | |
| 432-669, gnl|hg17|chr13 (23762769-23762965) | |
| 432-669, gnl|Hg17|chr13 (23762786-23763023) | |
| 432-669, gnl|loxAfr1|scaffold_9415 (46633-46437) | |
| 432-669, gnl|mm7|chr14 (55619288-55619483) | |
| 432-669, gnl|Mm7|chr14 (55619304-55619541) | |
| 432-669, gnl|monDom2|scaffold_15 (32827575-32827379) | |
| 432-669, gnl|oryCun1|scaffold_183026 (12864-12681) | |
| 432-669, gnl|panTro1|chr14 (22955353-22955549) | |
| 432-669, gnl|rheMac2|chr17 (4586548-4586744) | |
| 432-669, gnl|rn3|chr15 (39856729-39856922) | |
| 432-669, gnl|tetNig1|chr6 (2652796-2652985) | |
| 432-669, gnl|xenTro1|scaffold_417 (810366-810181) | |
| 797-1168, gnl|bosTau2|chr12 (19079669-19080037) | |
| 797-1168, gnl|Hg17|chr13 (23769499-23769867) | |
| 797-1168, gnl|Mm7|chr14 (55623883-55624251) | |
| 1251-1656, gnl|bosTau2|chr2 (459393-459787) | |
| 1251-1656, gnl|Hg17|chr2 (131637341-131637766) | |
| 1251-1656, gnl|Mm7|chr1 (35034900-35035260) | |
| 1298-1404, gnl|bosTau2|chr12 (19083577-19083683) | |
| 1298-1404, gnl|canFam2|chr25 (17714545-17714662) | |
| 1298-1404, gnl|danRer3|chr5 (8374785-8374930) | |
| 1298-1404, gnl|dasNov1|scaffold_50254 (3840-3723) | |
| 1298-1404, gnl|echTel1|scaffold_156550 (4706-4590) | |
| 1298-1404, gnl|fr1|chrUn (57852873-57852992) | |
| 1298-1404, gnl|galGal2|chr1 (169384494-169384611) | |
| 1298-1404, gnl|hg17|chr13 (23774796-23774913) | |
| 1298-1404, gnl|Hg17|chr13 (23774805-23774911) | |
| 1298-1404, gnl|loxAfr1|scaffold_9415 (32123-32006) | |
| 1298-1404, gnl|mm7|chr14 (55628609-55628726) | |
| 1298-1404, gnl|Mm7|chr14 (55628618-55628724) | |
| 1298-1404, gnl|monDom2|scaffold_15 (32805855-32805738) | |
| 1298-1404, gnl|oryCun1|scaffold_180741 (7460-7343) | |
| 1298-1404, gnl|panTro1|chr14 (22967033-22967150) | |
| 1298-1404, gnl|rheMac2|chr17 (4598888-4599005) | |
| 1298-1404, gnl|rn3|chr15 (39864799-39864916) | |
| 1298-1404, gnl|tetNig1|chr6 (2654055-2654174) | |
| 1298-1404, gnl|xenTro1|scaffold_382 (262920-263037) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| ecc (0.115035) |