Non-Coding RNA Search

Ss1.1-Bra1-olf_071_A05.5

Sequence:


               
               AAATGGGNAAAAAAAAAAAAAAAAAAAAGAAAGAAACAAGGGNAAAAAGCTGTAAAAATC
ACTGGCATTTGTGGGGCTTCGAACCTTCCGGCCGCTCCCCACTCAAGCTCCACGTGTCCG
TCTGCTCCTGGCCTCTTCTGGGGACCGGCCGGGGCAGTGAACTTGTCCGCTGGGGCCCGT
CACCCGTGGGAAAGTGTTTGCTAGATGGCGCCCCGCCCCAAGGCGTCTGCATCCTCCCTG
CTGTGCATGGCTCCCTGTCAGGAGTGTCAGGTGCCGCCTGGAGAGGGGCTGGGGGCGCCG
AGGGGGCCCGTCCTCCCTCCGGCTTCCCTTCCCTCCTCTCCTCCCCGAGAAGGCGCCCCT
GCGTGGGTGAGCGGTGCCGAGCTGGGCCAGCCCCTCTGGGAGGGTGCTGAGCCATCAAAA
GGCCCTGGGCCCTAGGAGGTGTACTGGTGGGGGGCACGCAGCAGGCGCACCTTCATTTCG
GGCCTCACACCTGGAAAGAAGGGGGCCCCGAGAGGATGTTGGGCTGCAGCCCAGTGGGGA
GGCGCCCCTGGGCTGGGCTCCCTTCCGTTGGGCACCTCTCCCTCTCTTCCTGCCTTGATG
TGCACAGACCCTCCCCCCCCCCGCCTGTGTGGCCACCGAGGGGTGTGGACCTTGAGCTGC
CAGGGCTCTGGGCTTGGTTGTGAGGCAGGAAGGAGAGAGGGGTCAGAGGCAGGCGGGCGC
GTCTGGCTCCCGGGCCAGGGCCGGTGTCTGCGGAAGAGGCTGCGCTCTCAGAGTCTGGGC
TCTGAACAGCGGCGAGCAGAGAGGGCTGTGCCAGGCATTGCGGGGCAGAGCAGGGCTGAC
CCCACCAGGCCTCCCAGAGACTGCAGCGTGTGACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGGGNAAAAAAAAAAAAAAAAAAAAGAAAGAAACAAGGGNAAAAAGCTGTAAAAATC
ACTGGCATTTGTGGGGCTTCGAACCTTCCGGCCGCTCCCCACTCAAGCTCCACGTGTCCG
TCTGCTCCTGGCCTCTTCTGGGGACCGGCCGGGGCAGTGAACTTGTCCGCTGGGGCCCGT
CACCCGTGGGAAAGTGTTTGCTAGATGGCGCCCCGCCCCAAGGCGTCTGCATCCTCCCTG
CTGTGCATGGCTCCCTGTCAGGAGTGTCAGGTGCCGCCTGGAGAGGGGCTGGGGGCGCCG
AGGGGGCCCGTCCTCCCTCCGGCTTCCCTTCCCTCCTCTCCTCCCCGAGAAGGCGCCCCT
GCGTGGGTGAGCGGTGCCGAGCTGGGCCAGCCCCTCTGGGAGGGTGCTGAGCCATCAAAA
GGCCCTGGGCCCTAGGAGGTGTACTGGTGGGGGGCACGCAGCAGGCGCACCTTCATTTCG
GGCCTCACACCTGGAAAGAAGGGGGCCCCGAGAGGATGTTGGGCTGCAGCCCAGTGGGGA
GGCGCCCCTGGGCTGGGCTCCCTTCCGTTGGGCACCTCTCCCTCTCTTCCTGCCTTGATG
TGCACAGACCCTCCCCCCCCCCGCCTGTGTGGCCACCGAGGGGTGTGGACCTTGAGCTGC
CAGGGCTCTGGGCTTGGTTGTGAGGCAGGAAGGAGAGAGGGGTCAGAGGCAGGCGGGCGC
GTCTGGCTCCCGGGCCAGGGCCGGTGTCTGCGGAAGAGGCTGCGCTCTCAGAGTCTGGGC
TCTGAACAGCGGCGAGCAGAGAGGGCTGTGCCAGGCATTGCGGGGCAGAGCAGGGCTGAC
CCCACCAGGCCTCCCAGAGACTGCAGCGTGTGACGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               168-257, + strand, RNAz p=0.565809

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-257, + strand, RNAz p=0.565809

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-353, gnl|bosTau2|chr4 (39154954-39154616)
               

               
               25-353, gnl|Hg17|chr7 (44032120-44031746)
               

               
               25-353, gnl|Mm7|chr11 (5923607-5923256)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-353, gnl|bosTau2|chr4 (39154954-39154616)
               

               
               25-353, gnl|Hg17|chr7 (44032120-44031746)
               

               
               25-353, gnl|Mm7|chr11 (5923607-5923256)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	25-353, gnl\|bosTau2\|chr4 (39154954-39154616)
	25-353, gnl\|Hg17\|chr7 (44032120-44031746)
	25-353, gnl\|Mm7\|chr11 (5923607-5923256)