Ss1.1-Bra1-olf_101_C10.5
|
GGAGCTGCCGCAGCGTCCGANCCA------------GCGTGTGAGCAAGGCGCTAGGTGC
GAGCGGTGGCTGGCGACGCACCCAAGGCCCGGGCACTACAGCGCCCCGGCTCAGGGCTTG
CGCCTCGCCTGCTGCAAACTAACCTGAGCGCCAGGATTCGGCCGGATTCCTCAACGGCCC
GAGCTCACCCCAGCCCGGCCTAGCCGAACCCCTGCGCCCGCCTGCCCGCCTGTCGCAACA
GCAGCCGCAGCCGCCGCTCCATCCCCAGCTGGGGCCCCGCATCCAGGCCGCCAGGATGGA
CGTGTTCATGAAGGGCCTGTCCATGGCCAAGGAGGGCGTTGTGGCCGCTGCGGAGAAAAC
CAAGCAAGGGGTCACCGAGGCCGCGGAGAAGACCAAGGAGGGTGTCCTCTACGTTGGAAG
CAAGACCCGAGAGGGGGTGGTACAAGGAGTGGCCTCAGTGGCTGAGAAAACCAAGGAGCA
GGCATCACATCTGGGAGGAGCCGTGTTCTCTGGGGCTGGGAACATTGCGGCAGCCACAGG
CCTGGTGAAGAAGGAGGAGTTCCCCGCTGATCTGAAGCCAGAGGAAGTGGCCCAGGAAGC
TGCAGAGGAGCCGCTGATCGAGCCCCTGATGGAGCCAGGAGAGAGTTATGAGGAACCGCC
CCAGGAGGAGTATCAGGAGTATGAGCCAGAGGCGTAAGGGCCCAGGACGGCCCCTCACCA
GCAGCACAACCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAGCTGCCGCAGCGTCCGANCCA------------GCGTGTGAGCAAGGCGCTAGGTGC
GAGCGGTGGCTGGCGACGCACCCAAGGCCCGGGCACTACAGCGCCCCGGCTCAGGGCTTG
CGCCTCGCCTGCTGCAAACTAACCTGAGCGCCAGGATTCGGCCGGATTCCTCAACGGCCC
GAGCTCACCCCAGCCCGGCCTAGCCGAACCCCTGCGCCCGCCTGCCCGCCTGTCGCAACA
GCAGCCGCAGCCGCCGCTCCATCCCCAGCTGGGGCCCCGCATCCAGGCCGCCAGGATGGA
CGTGTTCATGAAGGGCCTGTCCATGGCCAAGGAGGGCGTTGTGGCCGCTGCGGAGAAAAC
CAAGCAAGGGGTCACCGAGGCCGCGGAGAAGACCAAGGAGGGTGTCCTCTACGTTGGAAG
CAAGACCCGAGAGGGGGTGGTACAAGGAGTGGCCTCAGTGGCTGAGAAAACCAAGGAGCA
GGCATCACATCTGGGAGGAGCCGTGTTCTCTGGGGCTGGGAACATTGCGGCAGCCACAGG
CCTGGTGAAGAAGGAGGAGTTCCCCGCTGATCTGAAGCCAGAGGAAGTGGCCCAGGAAGC
TGCAGAGGAGCCGCTGATCGAGCCCCTGATGGAGCCAGGAGAGAGTTATGAGGAACCGCC
CCAGGAGGAGTATCAGGAGTATGAGCCAGAGGCGTAAGGGCCCAGGACGGCCCCTCACCA
GCAGCACAACCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
19-275, gnl|bosTau2|chr7 (26261848-26261600) |
|
19-275, gnl|Hg17|chr5 (175990105-175989886) |
|
19-275, gnl|Mm7|chr13 (53848867-53848640) |
| |
|
444-565, gnl|bosTau2|chr7 (26257835-26257714) |
|
444-565, gnl|canFam2|chr4 (39905360-39905222) |
|
444-565, gnl|echTel1|scaffold_303215 (6340-6478) |
|
444-565, gnl|fr1|chrUn (127323947-127323850) |
|
444-565, gnl|galGal2|chr13 (1028360-1028222) |
|
444-565, gnl|hg17|chr5 (175985998-175986136) |
|
444-565, gnl|Hg17|chr5 (175986126-175986005) |
|
444-565, gnl|loxAfr1|scaffold_75776 (5588-5727) |
|
444-565, gnl|mm7|chr13 (53844992-53845130) |
|
444-565, gnl|Mm7|chr13 (53845120-53844999) |
|
444-565, gnl|oryCun1|scaffold_163308 (9146-9284) |
|
444-565, gnl|rheMac2|chr6 (173113306-173113444) |
|
444-565, gnl|rn3|chr17 (15911678-15911540) |
|
444-565, gnl|tetNig1|chr1 (2773391-2773291) |
|
444-565, gnl|xenTro1|scaffold_235 (108394-108531) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
19-275, gnl|bosTau2|chr7 (26261848-26261600) |
|
19-275, gnl|Hg17|chr5 (175990105-175989886) |
|
19-275, gnl|Mm7|chr13 (53848867-53848640) |
| |
|
444-565, gnl|bosTau2|chr7 (26257835-26257714) |
|
444-565, gnl|canFam2|chr4 (39905360-39905222) |
|
444-565, gnl|echTel1|scaffold_303215 (6340-6478) |
|
444-565, gnl|fr1|chrUn (127323947-127323850) |
|
444-565, gnl|galGal2|chr13 (1028360-1028222) |
|
444-565, gnl|hg17|chr5 (175985998-175986136) |
|
444-565, gnl|Hg17|chr5 (175986126-175986005) |
|
444-565, gnl|loxAfr1|scaffold_75776 (5588-5727) |
|
444-565, gnl|mm7|chr13 (53844992-53845130) |
|
444-565, gnl|Mm7|chr13 (53845120-53844999) |
|
444-565, gnl|oryCun1|scaffold_163308 (9146-9284) |
|
444-565, gnl|rheMac2|chr6 (173113306-173113444) |
|
444-565, gnl|rn3|chr17 (15911678-15911540) |
|
444-565, gnl|tetNig1|chr1 (2773391-2773291) |
|
444-565, gnl|xenTro1|scaffold_235 (108394-108531) |
|
fhi (0.169578) |
|
hyp (0.142837) |
|
ebs (0.118301) |
|
fhi (0.169578) |
|
hyp (0.142837) |
|
ebs (0.118301) |
