Non-Coding RNA Search

Ss1.1-Bra1-olf_111_A06.5

Sequence:


               
               AGAAAGATCCAAAACAAGTGGCTATGGCCATCGCCCAGGAGTCTTCAGACGCCGGAATTC
GGCCCTCGTTCCGAGCTGGTTCCGCCTCCTCTCCCCCGGGTATGGCGCTGTCCGGGTCGA
CCCCGGCCCCGAGTTGGGAGGAGGATGAGTGCCTGGACTACTACGGGATGCTGTCGCTTC
ACCGCATGTTCGAGGTGGTGGGCGGGCAACTGACTGAGTGCGAGCTGGAGCTGCTAGCCT
TCCTGCTGGACGAGGTCCCAGGCGCCGCCGGCGGCCTAGCCCGCGCCCGCAGCGGCCTGG
AGCTGCTGCTGGAGCTGGAGCGCCGCGGGCAGTGCGACGAGAGCAACCTGCGGCTGCTGG
GGCAACTCCTGCGCGTGCTGGCCCGCCACGACTTGCTGCCGCACCTGGCGCGCAAGCGGC
GCCGGCCAGTCTCTCCAGAACGCTACAGCTATGGCACATCCAGCTCTTCCTCAGAGAGAA
CTGAGAGCAGCTGCCGGCGCCGTCGGCAGTCGAGCCGTTCTTCAAATGCTCAGCAGGATC
AGTGGGAGACAGGTTCCCCTCCAGCCAAGCGGCAGCGGCGGAGTCGTGGCCGTCCCAATG
GTGGTGCCAGACGGCGGCGGAGAGGGGGCCCAGCCGCACCCCAGCAGCAGCAAGAGCCAG
CCAGGCCCACCTCAGAAGGCAAAGTGACCTGTGATATCCGGCTCAGGGTGCGAGCAGAGT
ACTGTGAGCATGGGCCAGCCTTGGAGCAGGGCGTGGCATCCCGGCGGCCCCAGGCACTGG
CGCGGCAGCTGGATGTGTTTGGGCAGGCTACAGCAGTGCTGCGCTCGAGGGACCTGGGCT
CGGCGGTCTGTGACATCAAGTTCTCAGAGCTCTCCTATCTGGACGCCTTCTGGGGTGACT
ACCTGAGTGGGGCCCTGCTGCAGGCCCTGCGGGGCGTGTTCCTGACTGAGGCTCTGCGAG
AGGCAGTGGGCCGGGAGGCTGTCCGCCTGCTGGTCAGTGTGGACGAAGCCGATTACGAGG
CTGGCCGGCGCCGCTTGCTGCTGATGGAGGAGGAGGGAGGACGGCACTTGCCTGAGGCCT
CCTGATCTTGGATCTGGCGGGATTGACCCACCTCCCAGCCTCCAGGCCACCTTCACCCTG
GAGGACGATGACCATCTCTATCCCTAGAGGACTGTCACTCCAGCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAGATCCAAAACAAGTGGCTATGGCCATCGCCCAGGAGTCTTCAGACGCCGGAATTC
GGCCCTCGTTCCGAGCTGGTTCCGCCTCCTCTCCCCCGGGTATGGCGCTGTCCGGGTCGA
CCCCGGCCCCGAGTTGGGAGGAGGATGAGTGCCTGGACTACTACGGGATGCTGTCGCTTC
ACCGCATGTTCGAGGTGGTGGGCGGGCAACTGACTGAGTGCGAGCTGGAGCTGCTAGCCT
TCCTGCTGGACGAGGTCCCAGGCGCCGCCGGCGGCCTAGCCCGCGCCCGCAGCGGCCTGG
AGCTGCTGCTGGAGCTGGAGCGCCGCGGGCAGTGCGACGAGAGCAACCTGCGGCTGCTGG
GGCAACTCCTGCGCGTGCTGGCCCGCCACGACTTGCTGCCGCACCTGGCGCGCAAGCGGC
GCCGGCCAGTCTCTCCAGAACGCTACAGCTATGGCACATCCAGCTCTTCCTCAGAGAGAA
CTGAGAGCAGCTGCCGGCGCCGTCGGCAGTCGAGCCGTTCTTCAAATGCTCAGCAGGATC
AGTGGGAGACAGGTTCCCCTCCAGCCAAGCGGCAGCGGCGGAGTCGTGGCCGTCCCAATG
GTGGTGCCAGACGGCGGCGGAGAGGGGGCCCAGCCGCACCCCAGCAGCAGCAAGAGCCAG
CCAGGCCCACCTCAGAAGGCAAAGTGACCTGTGATATCCGGCTCAGGGTGCGAGCAGAGT
ACTGTGAGCATGGGCCAGCCTTGGAGCAGGGCGTGGCATCCCGGCGGCCCCAGGCACTGG
CGCGGCAGCTGGATGTGTTTGGGCAGGCTACAGCAGTGCTGCGCTCGAGGGACCTGGGCT
CGGCGGTCTGTGACATCAAGTTCTCAGAGCTCTCCTATCTGGACGCCTTCTGGGGTGACT
ACCTGAGTGGGGCCCTGCTGCAGGCCCTGCGGGGCGTGTTCCTGACTGAGGCTCTGCGAG
AGGCAGTGGGCCGGGAGGCTGTCCGCCTGCTGGTCAGTGTGGACGAAGCCGATTACGAGG
CTGGCCGGCGCCGCTTGCTGCTGATGGAGGAGGAGGGAGGACGGCACTTGCCTGAGGCCT
CCTGATCTTGGATCTGGCGGGATTGACCCACCTCCCAGCCTCCAGGCCACCTTCACCCTG
GAGGACGATGACCATCTCTATCCCTAGAGGACTGTCACTCCAGCAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               DEDD2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               DEDD2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               973-1092, + strand, RNAz p=0.547284

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               973-1092, + strand, RNAz p=0.547284

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               61-429, gnl|bosTau2|chr18 (44938077-44937710)
               

               
               61-429, gnl|Hg17|chr19 (47413038-47412672)
               

               
               61-429, gnl|Mm7|chr7 (22008102-22007735)
               


               
               693-1187, gnl|bosTau2|chr18 (44924681-44924186)
               

               
               693-1187, gnl|Hg17|chr19 (47395822-47395333)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-429, gnl|bosTau2|chr18 (44938077-44937710)
               

               
               61-429, gnl|Hg17|chr19 (47413038-47412672)
               

               
               61-429, gnl|Mm7|chr7 (22008102-22007735)
               


               
               693-1187, gnl|bosTau2|chr18 (44924681-44924186)
               

               
               693-1187, gnl|Hg17|chr19 (47395822-47395333)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               eep (0.122564)

	61-429, gnl\|bosTau2\|chr18 (44938077-44937710)
	61-429, gnl\|Hg17\|chr19 (47413038-47412672)
	61-429, gnl\|Mm7\|chr7 (22008102-22007735)

	693-1187, gnl\|bosTau2\|chr18 (44924681-44924186)
	693-1187, gnl\|Hg17\|chr19 (47395822-47395333)