Ss1.1-Bra1-olf_111_C10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGATGTGCGGCCGCCTGCCCTTCTACAACCAGGACCACGAGCGCCTCTTCGAGCTCATCC TCATGGAGGAGATCCGCTTCCCGCGCACGCTCAGCCCCGAGGCCAAGTCCTTGCTTGCGG GGCTGCTTAAGAAGGACCCAAAGCAGAGGCTCGGCGGGGGGCCCAGCGATGCCAAGGAGG TCATGGAGCACAGGTTCTTCCTCACCGTCAACTGGCAGGACGTGGTACAGAAGAAGCTCC TGCCACCCTTCAAACCTCAGGTCACATCTGAGGTCGACACTCGGTACTTTGACGATGAAT TCACCGCCCAATCCATCACAATCACGCCCCCGGACCGCTATGACAGCCTGGGCTCGCTCG AACTGGACCAGCGGACCCACTTCCCCCAGTTCTCCTACTCGGCCAGCATCCGGGAGTGAG CAGTGCTGCCTGCCCGCCGCCGCCACAGGACACTCGCACGGCTGCTGTCACTGCCGGGGG GCTTTTTCTTTTTTTTTTTTTAAACTTTTTATTTCGCCCTTTTTGGTTGGGGCCCCATTC CTAATCTCCTTACCCCCGGTTCCAGTTTTTTCTTCAGCCCTCTGCCAAACGCACCTAAGG GGGCCCAGGGGCCCTGCCTCCAAAGTCCTGTCCTGCCTTCTCCTTTGGGCCCAAACCAGG GTTAGGGAGACTCTCCACCTCCTGCCCCAGGACCACCGGGCCTTTGGGCGGGTGGAGAGA TTTCAGTTTTTAATCAACCCAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGATGTGCGGCCGCCTGCCCTTCTACAACCAGGACCACGAGCGCCTCTTCGAGCTCATCC TCATGGAGGAGATCCGCTTCCCGCGCACGCTCAGCCCCGAGGCCAAGTCCTTGCTTGCGG GGCTGCTTAAGAAGGACCCAAAGCAGAGGCTCGGCGGGGGGCCCAGCGATGCCAAGGAGG TCATGGAGCACAGGTTCTTCCTCACCGTCAACTGGCAGGACGTGGTACAGAAGAAGCTCC TGCCACCCTTCAAACCTCAGGTCACATCTGAGGTCGACACTCGGTACTTTGACGATGAAT TCACCGCCCAATCCATCACAATCACGCCCCCGGACCGCTATGACAGCCTGGGCTCGCTCG AACTGGACCAGCGGACCCACTTCCCCCAGTTCTCCTACTCGGCCAGCATCCGGGAGTGAG CAGTGCTGCCTGCCCGCCGCCGCCACAGGACACTCGCACGGCTGCTGTCACTGCCGGGGG GCTTTTTCTTTTTTTTTTTTTAAACTTTTTATTTCGCCCTTTTTGGTTGGGGCCCCATTC CTAATCTCCTTACCCCCGGTTCCAGTTTTTTCTTCAGCCCTCTGCCAAACGCACCTAAGG GGGCCCAGGGGCCCTGCCTCCAAAGTCCTGTCCTGCCTTCTCCTTTGGGCCCAAACCAGG GTTAGGGAGACTCTCCACCTCCTGCCCCAGGACCACCGGGCCTTTGGGCGGGTGGAGAGA TTTCAGTTTTTAATCAACCCAAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 620-744, - strand, RNAz p=0.999235 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 620-744, - strand, RNAz p=0.999235 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-149, gnl|bosTau2|chr18 (41339325-41339177) | |
| 1-149, gnl|canFam2|chr1 (116313561-116313467) | |
| 1-149, gnl|danRer3|chr18 (42665327-42665232) | |
| 1-149, gnl|dasNov1|scaffold_9481 (4574-4668) | |
| 1-149, gnl|echTel1|scaffold_246360 (5783-5870) | |
| 1-149, gnl|fr1|chrUn (190293456-190293366) | |
| 1-149, gnl|galGal2|chr5 (48393774-48393868) | |
| 1-149, gnl|hg17|chr19 (45433632-45433726) | |
| 1-149, gnl|Hg17|chr19 (45433784-45433636) | |
| 1-149, gnl|loxAfr1|scaffold_151926 (4028-4096) | |
| 1-149, gnl|mm7|chr7 (24555788-24555694) | |
| 1-149, gnl|Mm7|chr7 (24555634-24555782) | |
| 1-149, gnl|monDom2|scaffold_149 (42018-42112) | |
| 1-149, gnl|oryCun1|scaffold_145419 (9132-9225) | |
| 1-149, gnl|panTro1|chr20 (42368642-42368736) | |
| 1-149, gnl|rheMac2|chr19 (46592303-46592397) | |
| 1-149, gnl|rn3|chr1 (82802727-82802633) | |
| 1-149, gnl|tetNig1|chrUn_random (15250493-15250398) | |
| 1-149, gnl|xenTro1|scaffold_886 (414375-414282) | |
| 313-744, gnl|bosTau2|chr18 (41337453-41337037) | |
| 313-744, gnl|Hg17|chr19 (45431721-45431332) | |
| 313-744, gnl|Mm7|chr7 (24557333-24557712) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-149, gnl|bosTau2|chr18 (41339325-41339177) | |
| 1-149, gnl|canFam2|chr1 (116313561-116313467) | |
| 1-149, gnl|danRer3|chr18 (42665327-42665232) | |
| 1-149, gnl|dasNov1|scaffold_9481 (4574-4668) | |
| 1-149, gnl|echTel1|scaffold_246360 (5783-5870) | |
| 1-149, gnl|fr1|chrUn (190293456-190293366) | |
| 1-149, gnl|galGal2|chr5 (48393774-48393868) | |
| 1-149, gnl|hg17|chr19 (45433632-45433726) | |
| 1-149, gnl|Hg17|chr19 (45433784-45433636) | |
| 1-149, gnl|loxAfr1|scaffold_151926 (4028-4096) | |
| 1-149, gnl|mm7|chr7 (24555788-24555694) | |
| 1-149, gnl|Mm7|chr7 (24555634-24555782) | |
| 1-149, gnl|monDom2|scaffold_149 (42018-42112) | |
| 1-149, gnl|oryCun1|scaffold_145419 (9132-9225) | |
| 1-149, gnl|panTro1|chr20 (42368642-42368736) | |
| 1-149, gnl|rheMac2|chr19 (46592303-46592397) | |
| 1-149, gnl|rn3|chr1 (82802727-82802633) | |
| 1-149, gnl|tetNig1|chrUn_random (15250493-15250398) | |
| 1-149, gnl|xenTro1|scaffold_886 (414375-414282) | |
| 313-744, gnl|bosTau2|chr18 (41337453-41337037) | |
| 313-744, gnl|Hg17|chr19 (45431721-45431332) | |
| 313-744, gnl|Mm7|chr7 (24557333-24557712) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.140036) |