Ss1.1-Bra1-olf_131_E05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGGAGGGGTGCAGGAGCCCCTCCACCTGGACCTCAGGCATCAGGCCGGCCAGAGCCCG CCGTGCCCGCTGCTCGGCCACGCGCCCCACGCCCACCACCAGCCGCACCCCCAGCAGCTG CACCTGCCGGCAAAGCGCTGCATCACACACCCCGAGGAGCTGTTCTCGCTGCTTGGCCGG CAGTTCGGCAGGGGTGAGATTGCGCCCACTGGGGGCCAGGAGGAGCAGAGGACACAGGTT GTGGACGAAACAGTGACGGAAGAAGACCTCGGGCTGTCCACAGAGGTTCCGGAAAAAGCC CCAGAACCGGGCACCACTTACCTCGGACTGAGGGCACTCCAGTCCCAGCACTGGTCGCTT GGGGTGCTCTTGGGGAGGGGTCAGCACAGAGCCCCCGATGCCTAACCAGTCCCGGACCAT ACTCACTTCCCCAAAGGGCACCCCAGTCTGGGCCATGCCAAAGGGTCCTGGGTTCATGCC CAAGAAGAGCACTTGCTTGGGGCCCTGGCAGTAGCGGGTGACGTAGCTGCGATGTGGCTC CCAGGCGTACTCCACAGGATTGTAGATGAGGCCCACAGGCTCGGAAAACTGTAGTTGCTT CAGCTCACCATTAAGCCGGAGCTCCTCCTCCAGGAAGCCCTCAGCCAAACTTCGAGGGGA GGGCTGGGGCTCCATAAGGGCGCCTGCAGGTTCGTGGAGGGGCCCCAGTGGGAAAGCCTG GGGCACAGCCATGCCACTGTCACCTGGTCCGGTGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGGAGGGGTGCAGGAGCCCCTCCACCTGGACCTCAGGCATCAGGCCGGCCAGAGCCCG CCGTGCCCGCTGCTCGGCCACGCGCCCCACGCCCACCACCAGCCGCACCCCCAGCAGCTG CACCTGCCGGCAAAGCGCTGCATCACACACCCCGAGGAGCTGTTCTCGCTGCTTGGCCGG CAGTTCGGCAGGGGTGAGATTGCGCCCACTGGGGGCCAGGAGGAGCAGAGGACACAGGTT GTGGACGAAACAGTGACGGAAGAAGACCTCGGGCTGTCCACAGAGGTTCCGGAAAAAGCC CCAGAACCGGGCACCACTTACCTCGGACTGAGGGCACTCCAGTCCCAGCACTGGTCGCTT GGGGTGCTCTTGGGGAGGGGTCAGCACAGAGCCCCCGATGCCTAACCAGTCCCGGACCAT ACTCACTTCCCCAAAGGGCACCCCAGTCTGGGCCATGCCAAAGGGTCCTGGGTTCATGCC CAAGAAGAGCACTTGCTTGGGGCCCTGGCAGTAGCGGGTGACGTAGCTGCGATGTGGCTC CCAGGCGTACTCCACAGGATTGTAGATGAGGCCCACAGGCTCGGAAAACTGTAGTTGCTT CAGCTCACCATTAAGCCGGAGCTCCTCCTCCAGGAAGCCCTCAGCCAAACTTCGAGGGGA GGGCTGGGGCTCCATAAGGGCGCCTGCAGGTTCGTGGAGGGGCCCCAGTGGGAAAGCCTG GGGCACAGCCATGCCACTGTCACCTGGTCCGGTGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 80-399, - strand, RNAz p=0.579604 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-399, - strand, RNAz p=0.579604 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-442, gnl|bosTau2|chr5 (16611528-16611087) | |
| 1-442, gnl|canFam2|chr27 (4091757-4092238) | |
| 1-442, gnl|canFam2|chr27 (4092249-4091719) | |
| 1-442, gnl|danRer3|chrNA (130475741-130476222) | |
| 1-442, gnl|danRer3|chrNA (130476233-130475707) | |
| 1-442, gnl|dasNov1|scaffold_27909 (34407-34752) | |
| 1-442, gnl|dasNov1|scaffold_27909 (34763-34409) | |
| 1-442, gnl|echTel1|scaffold_322533 (19600-19119) | |
| 1-442, gnl|echTel1|scaffold_322533 (19108-19634) | |
| 1-442, gnl|fr1|chrUn (182047585-182047104) | |
| 1-442, gnl|fr1|chrUn (182047093-182047604) | |
| 1-442, gnl|galGal2|chrUn (159823884-159824365) | |
| 1-442, gnl|galGal2|chrUn (159824376-159823868) | |
| 1-442, gnl|hg17|chr12 (52862183-52862716) | |
| 1-442, gnl|Hg17|chr12 (52862234-52862675) | |
| 1-442, gnl|hg17|chr18 (45431004-45431486) | |
| 1-442, gnl|loxAfr1|scaffold_2244 (18453-18934) | |
| 1-442, gnl|loxAfr1|scaffold_2244 (18945-18416) | |
| 1-442, gnl|mm7|chr15 (103143956-103143477) | |
| 1-442, gnl|mm7|chr15 (103143466-103144001) | |
| 1-442, gnl|Mm7|chr15 (103143517-103143958) | |
| 1-442, gnl|monDom2|scaffold_22 (43804292-43804773) | |
| 1-442, gnl|monDom2|scaffold_22 (43804784-43804253) | |
| 1-442, gnl|oryCun1|scaffold_112937 (1784-2234) | |
| 1-442, gnl|oryCun1|scaffold_112937 (2245-1786) | |
| 1-442, gnl|panTro1|chr10 (54115681-54116214) | |
| 1-442, gnl|panTro1|chr17 (41908247-41908729) | |
| 1-442, gnl|rheMac2|chr11 (51282013-51282546) | |
| 1-442, gnl|rheMac2|chr18 (42692115-42692593) | |
| 1-442, gnl|rn3|chr7 (142145167-142144688) | |
| 1-442, gnl|rn3|chr7 (142144677-142145211) | |
| 1-442, gnl|tetNig1|chr11 (7007028-7006547) | |
| 1-442, gnl|tetNig1|chr11 (7006536-7007047) | |
| 1-442, gnl|xenTro1|scaffold_136 (2103023-2103503) | |
| 1-442, gnl|xenTro1|scaffold_136 (2103515-2102982) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-442, gnl|bosTau2|chr5 (16611528-16611087) | |
| 1-442, gnl|canFam2|chr27 (4091757-4092238) | |
| 1-442, gnl|canFam2|chr27 (4092249-4091719) | |
| 1-442, gnl|danRer3|chrNA (130475741-130476222) | |
| 1-442, gnl|danRer3|chrNA (130476233-130475707) | |
| 1-442, gnl|dasNov1|scaffold_27909 (34407-34752) | |
| 1-442, gnl|dasNov1|scaffold_27909 (34763-34409) | |
| 1-442, gnl|echTel1|scaffold_322533 (19600-19119) | |
| 1-442, gnl|echTel1|scaffold_322533 (19108-19634) | |
| 1-442, gnl|fr1|chrUn (182047585-182047104) | |
| 1-442, gnl|fr1|chrUn (182047093-182047604) | |
| 1-442, gnl|galGal2|chrUn (159823884-159824365) | |
| 1-442, gnl|galGal2|chrUn (159824376-159823868) | |
| 1-442, gnl|hg17|chr12 (52862183-52862716) | |
| 1-442, gnl|Hg17|chr12 (52862234-52862675) | |
| 1-442, gnl|hg17|chr18 (45431004-45431486) | |
| 1-442, gnl|loxAfr1|scaffold_2244 (18453-18934) | |
| 1-442, gnl|loxAfr1|scaffold_2244 (18945-18416) | |
| 1-442, gnl|mm7|chr15 (103143956-103143477) | |
| 1-442, gnl|mm7|chr15 (103143466-103144001) | |
| 1-442, gnl|Mm7|chr15 (103143517-103143958) | |
| 1-442, gnl|monDom2|scaffold_22 (43804292-43804773) | |
| 1-442, gnl|monDom2|scaffold_22 (43804784-43804253) | |
| 1-442, gnl|oryCun1|scaffold_112937 (1784-2234) | |
| 1-442, gnl|oryCun1|scaffold_112937 (2245-1786) | |
| 1-442, gnl|panTro1|chr10 (54115681-54116214) | |
| 1-442, gnl|panTro1|chr17 (41908247-41908729) | |
| 1-442, gnl|rheMac2|chr11 (51282013-51282546) | |
| 1-442, gnl|rheMac2|chr18 (42692115-42692593) | |
| 1-442, gnl|rn3|chr7 (142145167-142144688) | |
| 1-442, gnl|rn3|chr7 (142144677-142145211) | |
| 1-442, gnl|tetNig1|chr11 (7007028-7006547) | |
| 1-442, gnl|tetNig1|chr11 (7006536-7007047) | |
| 1-442, gnl|xenTro1|scaffold_136 (2103023-2103503) | |
| 1-442, gnl|xenTro1|scaffold_136 (2103515-2102982) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.232504) |