Non-Coding RNA Search

Ss1.1-Bra1-olf_131_H10.5

Sequence:


               
               TTGCTGTTGCCTCACGCCAGGCCCCATCCTGTTGTGACACCCTTCATCCTACCCTTGGNA
ACCCCAAGGCCAAGTTTGCTTCAAACTGTTGGAGGACAGCGTTGGCCTGGATCTGGGGCA
CACTCGTCCTCAGCTCGACCGTCTCCCCCACCTCAGAGGGGAAAACTGAACACTGGACAG
CTGAGGCTTGGAAACATTTCTAAGTGTTGCCATGAAAGATTGGTGAGACCTCAAGGAGGC
TTTGTCTCATAAAAGGTGGAGAAAGATGCCGTTCTCCCTCGGGCCGGGTGGGTATGCCCA
TCTTGTGTTCCCCTCCCGCGCAAGCCATTTCCACCCACCCTCCTGTGGACCCCACCTGCG
AAGGAGACGAGGAAGCTTTGAGGGTGGGGGGCGTCCTGCCGGTTGGAGAAGCCCCTTGGC
AGGACGGCGTATGTGGACATGGGGTCTCCCCGACTTCTCTTCTCCAGCCACGGATTGCTT
GGCTTGGGCTGTGACTGACAGTGGATTGGCTGGAGTCTCCTCGCATCCAAAGCTAGGGAG
GGTGACTGAAGACCAACCCTCACAGACTGGGCCACGTGCCAGGTGCGGGTGTGATGACAC
ATTTGCCCTGTGGTGGCAGCAGCCATGCACTCAGATTTCTTGGCGTTTTTTTCACTTGCT
TCCTCTGTTGGGCCCTGAGGTCGGGAGGAGGAGACAGTATCTCAGGCTGGCAAGGGCTTG
CCCCATCTTGGGCACTTCATTTCTTTGGCCGGTGCCCTCCCTGCATCTCTGTCCTCCCGG
TGGTTAGTATGGGAAAGCCCATCTCAGTTCCTGTGAGCCAGTTGTCTTGAAAGCCAAGGT
TGAGTGACCTCTGCTTTGACAGTGGGGTCTAAGGCCTCTCCCTGCCCAGTCTGGTGCCTG
CCCCACAATGTACCAGACACTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCTGTTGCCTCACGCCAGGCCCCATCCTGTTGTGACACCCTTCATCCTACCCTTGGNA
ACCCCAAGGCCAAGTTTGCTTCAAACTGTTGGAGGACAGCGTTGGCCTGGATCTGGGGCA
CACTCGTCCTCAGCTCGACCGTCTCCCCCACCTCAGAGGGGAAAACTGAACACTGGACAG
CTGAGGCTTGGAAACATTTCTAAGTGTTGCCATGAAAGATTGGTGAGACCTCAAGGAGGC
TTTGTCTCATAAAAGGTGGAGAAAGATGCCGTTCTCCCTCGGGCCGGGTGGGTATGCCCA
TCTTGTGTTCCCCTCCCGCGCAAGCCATTTCCACCCACCCTCCTGTGGACCCCACCTGCG
AAGGAGACGAGGAAGCTTTGAGGGTGGGGGGCGTCCTGCCGGTTGGAGAAGCCCCTTGGC
AGGACGGCGTATGTGGACATGGGGTCTCCCCGACTTCTCTTCTCCAGCCACGGATTGCTT
GGCTTGGGCTGTGACTGACAGTGGATTGGCTGGAGTCTCCTCGCATCCAAAGCTAGGGAG
GGTGACTGAAGACCAACCCTCACAGACTGGGCCACGTGCCAGGTGCGGGTGTGATGACAC
ATTTGCCCTGTGGTGGCAGCAGCCATGCACTCAGATTTCTTGGCGTTTTTTTCACTTGCT
TCCTCTGTTGGGCCCTGAGGTCGGGAGGAGGAGACAGTATCTCAGGCTGGCAAGGGCTTG
CCCCATCTTGGGCACTTCATTTCTTTGGCCGGTGCCCTCCCTGCATCTCTGTCCTCCCGG
TGGTTAGTATGGGAAAGCCCATCTCAGTTCCTGTGAGCCAGTTGTCTTGAAAGCCAAGGT
TGAGTGACCTCTGCTTTGACAGTGGGGTCTAAGGCCTCTCCCTGCCCAGTCTGGTGCCTG
CCCCACAATGTACCAGACACTGGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               232-461, + strand, RNAz p=0.988146
               

               
               669-783, - strand, RNAz p=0.848946

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-461, + strand, RNAz p=0.988146
               

               
               669-783, - strand, RNAz p=0.848946

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_033551, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_033551, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-924, gnl|bosTau2|chr7 (44729542-44730460)
               

               
               1-924, gnl|Hg17|chr5 (154175038-154175999)
               

               
               1-924, gnl|Mm7|chr11 (58141462-58142374)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-924, gnl|bosTau2|chr7 (44729542-44730460)
               

               
               1-924, gnl|Hg17|chr5 (154175038-154175999)
               

               
               1-924, gnl|Mm7|chr11 (58141462-58142374)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	232-461, + strand, RNAz p=0.988146
	669-783, - strand, RNAz p=0.848946

	1-924, gnl\|bosTau2\|chr7 (44729542-44730460)
	1-924, gnl\|Hg17\|chr5 (154175038-154175999)
	1-924, gnl\|Mm7\|chr11 (58141462-58142374)