Ss1.1-Bra1-olf_141_H06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCGTGACTCCGGTGGCCCGAGAAGTTCGTAGCCTTTGTCAGGCCCGTGGTAGGAGGTGC CAGGCTCGCAGGGCCGAACCGGTTCGGGACGGAACGAAGCCTTTTGGAGGAGCCCCCAGA GGGGAGGCGGGAAGAAGGAACGCGGGGCCTCGGGGCTTCCACGCTTCTGCCCTGAGAGGT CGGCCCTGGCGGGAGAGCAGAACCTTCGCGGCCAGGAGGAGGTGGTAACCATGGAGACCG AAATGCCCGGGAAGAGAGGTGAGGGGGCTGGTGTTGAACTTGCGCTGGACAGTGCTGCCA CTGAGTGAATTGAAGTCTCAGCTCTGTCTTCCCAGGATTCTCCATTTTCCCAAGAGAAGA GCACAGAAGAGGGAGAAGTGGCAGCCCTTCGCCTCACTGCCAGATCCCAGGCATCGATGA CATTCAAGGACGTGGCCATGGACTTTACGCCAGAGGAGTGGGGGGAGCTGGACCCTGCGC AGAGGGCCGTGATGCCGGAGAACTACAGGAACCTGGCCTCGCTCTGGCTTCCAGCTTCCA AACCTGACAACTACAGTTTGAAGAATGGAAAAGAACCTTCGATGCTTGAGAGAAAAGTCC CCAAAAGCAGCTGCTCAGAACTGCCTTTGGTTGAACGAGAGCAAAGATTCAACTTCAGTG CAAGACTTTTCCTAAAGAAGAATCAGGCCAGGTTGGAGTAAAAGATCGGCTGACAAGGCA TGCTGTCTATGACTCCAACTTGGGGACAACTCTTGAATGTGAGAATTGGTTAGAGAATCA GCAAGAAAATCAGGAGAGACACTTGAGAGAAATGTTCACCCACATGAACTCACTTCCAGC AGAGAGGACTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCGTGACTCCGGTGGCCCGAGAAGTTCGTAGCCTTTGTCAGGCCCGTGGTAGGAGGTGC CAGGCTCGCAGGGCCGAACCGGTTCGGGACGGAACGAAGCCTTTTGGAGGAGCCCCCAGA GGGGAGGCGGGAAGAAGGAACGCGGGGCCTCGGGGCTTCCACGCTTCTGCCCTGAGAGGT CGGCCCTGGCGGGAGAGCAGAACCTTCGCGGCCAGGAGGAGGTGGTAACCATGGAGACCG AAATGCCCGGGAAGAGAGGTGAGGGGGCTGGTGTTGAACTTGCGCTGGACAGTGCTGCCA CTGAGTGAATTGAAGTCTCAGCTCTGTCTTCCCAGGATTCTCCATTTTCCCAAGAGAAGA GCACAGAAGAGGGAGAAGTGGCAGCCCTTCGCCTCACTGCCAGATCCCAGGCATCGATGA CATTCAAGGACGTGGCCATGGACTTTACGCCAGAGGAGTGGGGGGAGCTGGACCCTGCGC AGAGGGCCGTGATGCCGGAGAACTACAGGAACCTGGCCTCGCTCTGGCTTCCAGCTTCCA AACCTGACAACTACAGTTTGAAGAATGGAAAAGAACCTTCGATGCTTGAGAGAAAAGTCC CCAAAAGCAGCTGCTCAGAACTGCCTTTGGTTGAACGAGAGCAAAGATTCAACTTCAGTG CAAGACTTTTCCTAAAGAAGAATCAGGCCAGGTTGGAGTAAAAGATCGGCTGACAAGGCA TGCTGTCTATGACTCCAACTTGGGGACAACTCTTGAATGTGAGAATTGGTTAGAGAATCA GCAAGAAAATCAGGAGAGACACTTGAGAGAAATGTTCACCCACATGAACTCACTTCCAGC AGAGAGGACTCA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 55-154, - strand, RNAz p=0.691836 | |
| 640-758, + strand, RNAz p=0.747767 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 55-154, - strand, RNAz p=0.691836 | |
| 640-758, + strand, RNAz p=0.747767 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 55-288, gnl|bosTau2|chr19 (23585962-23586205) | |
| 55-288, gnl|canFam2|chr5 (42229833-42230351) | |
| 55-288, gnl|canFam2|chr5 (42230351-42229815) | |
| 55-288, gnl|dasNov1|scaffold_7623 (44016-44474) | |
| 55-288, gnl|dasNov1|scaffold_7623 (44474-43994) | |
| 55-288, gnl|echTel1|scaffold_298026 (41434-40938) | |
| 55-288, gnl|echTel1|scaffold_298026 (40938-41448) | |
| 55-288, gnl|hg17|chr17 (15544136-15544642) | |
| 55-288, gnl|hg17|chr17 (18525418-18525942) | |
| 55-288, gnl|Hg17|chr17 (15544172-15544438) | |
| 55-288, gnl|loxAfr1|scaffold_32082 (13559-13072) | |
| 55-288, gnl|loxAfr1|scaffold_32082 (13072-13548) | |
| 55-288, gnl|mm7|chr11 (62870693-62870246) | |
| 55-288, gnl|mm7|chr11 (62870246-62870711) | |
| 55-288, gnl|monDom2|scaffold_84 (5736421-5736873) | |
| 55-288, gnl|oryCun1|scaffold_117775 (2128-2660) | |
| 55-288, gnl|oryCun1|scaffold_117775 (2660-2113) | |
| 55-288, gnl|panTro1|chr19_random (4422293-4422805) | |
| 55-288, gnl|panTro1|chr19_random (4422805-4422275) | |
| 55-288, gnl|rheMac2|chr16 (15413384-15413894) | |
| 55-288, gnl|rheMac2|chr16 (15413894-15413366) | |
| 55-288, gnl|rn3|chr10 (48974467-48974024) | |
| 55-288, gnl|rn3|chr10 (48974024-48974485) | |
| 409-526, gnl|bosTau2|chr19 (23590975-23591092) | |
| 409-526, gnl|Mm7|chr11 (62866561-62866444) | |
| 640-846, gnl|bosTau2|chr19 (23596504-23596709) | |
| 640-846, gnl|canFam2|chr5 (42243840-42243992) | |
| 640-846, gnl|danRer3|chr19 (3795860-3796010) | |
| 640-846, gnl|dasNov1|scaffold_146893 (1586-1738) | |
| 640-846, gnl|echTel1|scaffold_294101 (41820-41668) | |
| 640-846, gnl|fr1|chrUn (318961724-318961572) | |
| 640-846, gnl|galGal2|chr18 (20162-20344) | |
| 640-846, gnl|hg17|chr17 (15560119-15560271) | |
| 640-846, gnl|Hg17|chr17 (15560118-15560323) | |
| 640-846, gnl|loxAfr1|scaffold_216504 (428-276) | |
| 640-846, gnl|mm7|chr11 (62862446-62862312) | |
| 640-846, gnl|Mm7|chr11 (62862445-62862258) | |
| 640-846, gnl|monDom2|scaffold_88 (1994119-1993969) | |
| 640-846, gnl|oryCun1|scaffold_191360 (9899-10039) | |
| 640-846, gnl|panTro1|chr19_random (4438290-4438442) | |
| 640-846, gnl|rheMac2|chr16 (15428150-15428302) | |
| 640-846, gnl|rn3|chr10 (48966504-48966370) | |
| 640-846, gnl|xenTro1|scaffold_584 (519907-519736) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 55-288, gnl|bosTau2|chr19 (23585962-23586205) | |
| 55-288, gnl|canFam2|chr5 (42229833-42230351) | |
| 55-288, gnl|canFam2|chr5 (42230351-42229815) | |
| 55-288, gnl|dasNov1|scaffold_7623 (44016-44474) | |
| 55-288, gnl|dasNov1|scaffold_7623 (44474-43994) | |
| 55-288, gnl|echTel1|scaffold_298026 (41434-40938) | |
| 55-288, gnl|echTel1|scaffold_298026 (40938-41448) | |
| 55-288, gnl|hg17|chr17 (15544136-15544642) | |
| 55-288, gnl|hg17|chr17 (18525418-18525942) | |
| 55-288, gnl|Hg17|chr17 (15544172-15544438) | |
| 55-288, gnl|loxAfr1|scaffold_32082 (13559-13072) | |
| 55-288, gnl|loxAfr1|scaffold_32082 (13072-13548) | |
| 55-288, gnl|mm7|chr11 (62870693-62870246) | |
| 55-288, gnl|mm7|chr11 (62870246-62870711) | |
| 55-288, gnl|monDom2|scaffold_84 (5736421-5736873) | |
| 55-288, gnl|oryCun1|scaffold_117775 (2128-2660) | |
| 55-288, gnl|oryCun1|scaffold_117775 (2660-2113) | |
| 55-288, gnl|panTro1|chr19_random (4422293-4422805) | |
| 55-288, gnl|panTro1|chr19_random (4422805-4422275) | |
| 55-288, gnl|rheMac2|chr16 (15413384-15413894) | |
| 55-288, gnl|rheMac2|chr16 (15413894-15413366) | |
| 55-288, gnl|rn3|chr10 (48974467-48974024) | |
| 55-288, gnl|rn3|chr10 (48974024-48974485) | |
| 409-526, gnl|bosTau2|chr19 (23590975-23591092) | |
| 409-526, gnl|Mm7|chr11 (62866561-62866444) | |
| 640-846, gnl|bosTau2|chr19 (23596504-23596709) | |
| 640-846, gnl|canFam2|chr5 (42243840-42243992) | |
| 640-846, gnl|danRer3|chr19 (3795860-3796010) | |
| 640-846, gnl|dasNov1|scaffold_146893 (1586-1738) | |
| 640-846, gnl|echTel1|scaffold_294101 (41820-41668) | |
| 640-846, gnl|fr1|chrUn (318961724-318961572) | |
| 640-846, gnl|galGal2|chr18 (20162-20344) | |
| 640-846, gnl|hg17|chr17 (15560119-15560271) | |
| 640-846, gnl|Hg17|chr17 (15560118-15560323) | |
| 640-846, gnl|loxAfr1|scaffold_216504 (428-276) | |
| 640-846, gnl|mm7|chr11 (62862446-62862312) | |
| 640-846, gnl|Mm7|chr11 (62862445-62862258) | |
| 640-846, gnl|monDom2|scaffold_88 (1994119-1993969) | |
| 640-846, gnl|oryCun1|scaffold_191360 (9899-10039) | |
| 640-846, gnl|panTro1|chr19_random (4438290-4438442) | |
| 640-846, gnl|rheMac2|chr16 (15428150-15428302) | |
| 640-846, gnl|rn3|chr10 (48966504-48966370) | |
| 640-846, gnl|xenTro1|scaffold_584 (519907-519736) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |