Non-Coding RNA Search

Ss1.1-Bra1-olf_Con27.5

Sequence:


               
               ATGGTTGTCTATTAACTTGTTCAAAAAAGTATCAGGAGTTGTCAAGGCAGAGAAGAGAGT
GTTTGCAAAAGGGGGAAAGTAGTTTGCTGCCYCTTTAAGACTAGGACTGAGAGAAAGAAG
AGAGAGAGAAAGAAAGGGAGAGAAGTTTGAGCCCCAGGCTTAAGCCTTTCCAAAAAATAA
TAATAACAATCATCGGCGGCGGCAGGATCGGCCAGAAGAGGAGGGAAGCGCTTTTTTGAT
CCCGATTCCAGTTTTGCCTTTCTTTTCTTCCCCCAAATTATTCTTCGTCTGATTTTCCTC
GCGGAGCTCTGCGCTCCCGACACCCCCGCCCGCCTCTCCTCCTCTCCCCCCGCCCGCGGG
CCCCCCAAAGTCCCGGCCGGGCAGAGGGTCGGCTGCTGCCGGCGGGCCGGGCCCGCGCAC
AGCGCCCGCATGTACAACATGATGGAGACGGAGCTGAAGCCGCCCGGCCCGCAGCAAACT
TCAGGGGGCGGCGGCGGCGGTGGCAACTCTACTGCTGCGGCGGCGGGCGGCAACCAGAAG
AACAGCCCAGACCGAGTTAAGCGGCCCATGAACGCTTTCATGGTGTGGTCCCGAGGGCAG
CGGCGCAAGATGGCCCAAGAGAACCCCAAGATGCACAACTCGGATATCAGCAAACGGCTG
GGCGCCGAGTGGAAACTTTTGTCGGAGACGGAGAAGCGGCCGTTCATCGACGAGGCCAAG
CGGCTGCGAGCGCTGCACATGAAGGAGCACCCGGATTATAAATACCGGCCCCGGCGGAAA
ACCAAGACGCTCATGAAGAAGGATAAGTACACACTGCCCGGAGGGCTGCTGGCCCCGGGA
GGCAACAGCATGGCGAGCGGGGTCGGGGTGGGCGCCGGCCTCGGCGCGGGCGTGAACCAG
CGCATGGACAGCTACGCGCACATGAATGGCTGGNAGCACGNCAGCTACAGCATGATGCAG
GGACAGCTGGGCTATCCGCAGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGTTGTCTATTAACTTGTTCAAAAAAGTATCAGGAGTTGTCAAGGCAGAGAAGAGAGT
GTTTGCAAAAGGGGGAAAGTAGTTTGCTGCCYCTTTAAGACTAGGACTGAGAGAAAGAAG
AGAGAGAGAAAGAAAGGGAGAGAAGTTTGAGCCCCAGGCTTAAGCCTTTCCAAAAAATAA
TAATAACAATCATCGGCGGCGGCAGGATCGGCCAGAAGAGGAGGGAAGCGCTTTTTTGAT
CCCGATTCCAGTTTTGCCTTTCTTTTCTTCCCCCAAATTATTCTTCGTCTGATTTTCCTC
GCGGAGCTCTGCGCTCCCGACACCCCCGCCCGCCTCTCCTCCTCTCCCCCCGCCCGCGGG
CCCCCCAAAGTCCCGGCCGGGCAGAGGGTCGGCTGCTGCCGGCGGGCCGGGCCCGCGCAC
AGCGCCCGCATGTACAACATGATGGAGACGGAGCTGAAGCCGCCCGGCCCGCAGCAAACT
TCAGGGGGCGGCGGCGGCGGTGGCAACTCTACTGCTGCGGCGGCGGGCGGCAACCAGAAG
AACAGCCCAGACCGAGTTAAGCGGCCCATGAACGCTTTCATGGTGTGGTCCCGAGGGCAG
CGGCGCAAGATGGCCCAAGAGAACCCCAAGATGCACAACTCGGATATCAGCAAACGGCTG
GGCGCCGAGTGGAAACTTTTGTCGGAGACGGAGAAGCGGCCGTTCATCGACGAGGCCAAG
CGGCTGCGAGCGCTGCACATGAAGGAGCACCCGGATTATAAATACCGGCCCCGGCGGAAA
ACCAAGACGCTCATGAAGAAGGATAAGTACACACTGCCCGGAGGGCTGCTGGCCCCGGGA
GGCAACAGCATGGCGAGCGGGGTCGGGGTGGGCGCCGGCCTCGGCGCGGGCGTGAACCAG
CGCATGGACAGCTACGCGCACATGAATGGCTGGNAGCACGNCAGCTACAGCATGATGCAG
GGACAGCTGGGCTATCCGCAGCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55621548|ref|XP_516895.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55621548|ref|XP_516895.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-984, gnl|bosTau2|chr1 (55836974-55837966)
               

               
               1-984, gnl|Hg17|chr3 (182912416-182913399)
               

               
               1-984, gnl|Mm7|chr3 (34457377-34458350)
               


               
               320-912, gnl|bosTau2|chr12 (47322211-47321616)
               

               
               320-912, gnl|Hg17|chr13 (111769863-111770489)
               

               
               320-912, gnl|Mm7|chr8 (12370333-12370968)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-984, gnl|bosTau2|chr1 (55836974-55837966)
               

               
               1-984, gnl|Hg17|chr3 (182912416-182913399)
               

               
               1-984, gnl|Mm7|chr3 (34457377-34458350)
               


               
               320-912, gnl|bosTau2|chr12 (47322211-47321616)
               

               
               320-912, gnl|Hg17|chr13 (111769863-111770489)
               

               
               320-912, gnl|Mm7|chr8 (12370333-12370968)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-984, gnl\|bosTau2\|chr1 (55836974-55837966)
	1-984, gnl\|Hg17\|chr3 (182912416-182913399)
	1-984, gnl\|Mm7\|chr3 (34457377-34458350)

	320-912, gnl\|bosTau2\|chr12 (47322211-47321616)
	320-912, gnl\|Hg17\|chr13 (111769863-111770489)
	320-912, gnl\|Mm7\|chr8 (12370333-12370968)