Non-Coding RNA Search

Ss1.1-CorL-UMC-pd12cl-002-c04.3

Sequence:


               
               TGTTTCATCAATGCAGTTCTCATCTAAGTATTTACTTTTTAAGAACAGCTGAGATATTCA
TTTTCTTTTCTAAATATCCATATATTGGGGGAAATTATTTTGACATGACGTGATAAAATG
TGAAAAATCAATGTGTCTCAGGCTCAAGTTTTTATAAAAAAAACTAAATGTTTCAAAATA
GTAGGTCTGTTTCCTCGGTGGTGTCCAGGGCCAAGCTAGTGCTTGGATAATTATTCAATT
AGCCAGTCACCATACTCTTAAGAGGCACCACCACTTAACTTCAAGCATATCTGAAAAAAC
ATATTATCTTCCTCCAAAAGTGATACCTTCCAGGCACAAAGAGAATGCACTGCTGAAAGA
GATCAAGAGTACAGCAGTTTCATTCAGTACATTTCAAGACGCATGTCTGCCAAACTGCAA
CATATGGGAAGTTTATTTCCTGACAGCAGGTGTACACATGCCAATACTTAATCATTTTAT
GGCACCTACTTCTCTCTCTGAGTGCCAAGTTTACAAACCTGCAGTTTTTAATTTGGTGGA
TGACAAATACTCTGCACCACCGATTAAAAGCTTGTTGGGGAGGGTGGGGGAAAACTACAG
ATGTTTGATGAACACCTGATTCCAGGATGAACAATGTATACAACGCACTTTCATCAAGTT
TTTAATAAAAAAAGGTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTCATCAATGCAGTTCTCATCTAAGTATTTACTTTTTAAGAACAGCTGAGATATTCA
TTTTCTTTTCTAAATATCCATATATTGGGGGAAATTATTTTGACATGACGTGATAAAATG
TGAAAAATCAATGTGTCTCAGGCTCAAGTTTTTATAAAAAAAACTAAATGTTTCAAAATA
GTAGGTCTGTTTCCTCGGTGGTGTCCAGGGCCAAGCTAGTGCTTGGATAATTATTCAATT
AGCCAGTCACCATACTCTTAAGAGGCACCACCACTTAACTTCAAGCATATCTGAAAAAAC
ATATTATCTTCCTCCAAAAGTGATACCTTCCAGGCACAAAGAGAATGCACTGCTGAAAGA
GATCAAGAGTACAGCAGTTTCATTCAGTACATTTCAAGACGCATGTCTGCCAAACTGCAA
CATATGGGAAGTTTATTTCCTGACAGCAGGTGTACACATGCCAATACTTAATCATTTTAT
GGCACCTACTTCTCTCTCTGAGTGCCAAGTTTACAAACCTGCAGTTTTTAATTTGGTGGA
TGACAAATACTCTGCACCACCGATTAAAAGCTTGTTGGGGAGGGTGGGGGAAAACTACAG
ATGTTTGATGAACACCTGATTCCAGGATGAACAATGTATACAACGCACTTTCATCAAGTT
TTTAATAAAAAAAGGTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               456-572, - strand, RNAz p=0.939544

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               456-572, - strand, RNAz p=0.939544

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-686, gnl|bosTau2|chr16 (5043290-5042573)
               

               
               2-686, gnl|Hg17|chr1 (189880548-189879837)
               

               
               2-686, gnl|Mm7|chr1 (143574190-143574920)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-686, gnl|bosTau2|chr16 (5043290-5042573)
               

               
               2-686, gnl|Hg17|chr1 (189880548-189879837)
               

               
               2-686, gnl|Mm7|chr1 (143574190-143574920)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	2-686, gnl\|bosTau2\|chr16 (5043290-5042573)
	2-686, gnl\|Hg17\|chr1 (189880548-189879837)
	2-686, gnl\|Mm7\|chr1 (143574190-143574920)