Non-Coding RNA Search

Ss1.1-CorL-UMC-pd12cl-018-b01.3

Sequence:


               
               TGTCCTCCGATTCCTCGAGCAACTTAAGCTGCAGAACCGAGAGTGAGACTGGTGTGGGTT
TGTCCTCCGCAGCCCTGAGCTCCCCAAGCAGAGTTTTTGTTCTTTCCTTGTCCCGGTTGA
AGGTCACCTTGGTTTTACAGAAGAAAATGCTGCATAGGAAAAATGAAATGCCTTTTATTC
TTAACCCACTGAGCAAGGGCAGGGACCGAATCCGCAACCTCATGGTTCCTAGTCGGATTC
GTTAACCACTGCGCCACGACGGAACCCTTTAAGCGTTGTAAAATCATTTTGGAAATTGTG
CCTGCTAGTTATGCAATAAACAGGCTCTATAAGTGTCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCCTCCGATTCCTCGAGCAACTTAAGCTGCAGAACCGAGAGTGAGACTGGTGTGGGTT
TGTCCTCCGCAGCCCTGAGCTCCCCAAGCAGAGTTTTTGTTCTTTCCTTGTCCCGGTTGA
AGGTCACCTTGGTTTTACAGAAGAAAATGCTGCATAGGAAAAATGAAATGCCTTTTATTC
TTAACCCACTGAGCAAGGGCAGGGACCGAATCCGCAACCTCATGGTTCCTAGTCGGATTC
GTTAACCACTGCGCCACGACGGAACCCTTTAAGCGTTGTAAAATCATTTTGGAAATTGTG
CCTGCTAGTTATGCAATAAACAGGCTCTATAAGTGTCAAAAAAAAAAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-337, gnl|bosTau2|chr17 (35945625-35945284)
               

               
               1-337, gnl|canFam2|chr26 (20243150-20242912)
               

               
               1-337, gnl|dasNov1|scaffold_92715 (2380-2627)
               

               
               1-337, gnl|galGal2|chr15 (6808436-6808678)
               

               
               1-337, gnl|hg17|chr12 (108830321-108830557)
               

               
               1-337, gnl|Hg17|chr12 (108830652-108830327)
               

               
               1-337, gnl|loxAfr1|scaffold_63310 (5265-5017)
               

               
               1-337, gnl|mm7|chr5 (113948240-113948457)
               

               
               1-337, gnl|Mm7|chr5 (113948547-113948244)
               

               
               1-337, gnl|monDom2|scaffold_192 (389377-389154)
               

               
               1-337, gnl|oryCun1|scaffold_212548 (54541-54789)
               

               
               1-337, gnl|panTro1|chr10 (111423582-111423820)
               

               
               1-337, gnl|rheMac2|chr11 (110843270-110843508)
               

               
               1-337, gnl|rn3|chr12 (43024112-43023896)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-337, gnl|bosTau2|chr17 (35945625-35945284)
               

               
               1-337, gnl|canFam2|chr26 (20243150-20242912)
               

               
               1-337, gnl|dasNov1|scaffold_92715 (2380-2627)
               

               
               1-337, gnl|galGal2|chr15 (6808436-6808678)
               

               
               1-337, gnl|hg17|chr12 (108830321-108830557)
               

               
               1-337, gnl|Hg17|chr12 (108830652-108830327)
               

               
               1-337, gnl|loxAfr1|scaffold_63310 (5265-5017)
               

               
               1-337, gnl|mm7|chr5 (113948240-113948457)
               

               
               1-337, gnl|Mm7|chr5 (113948547-113948244)
               

               
               1-337, gnl|monDom2|scaffold_192 (389377-389154)
               

               
               1-337, gnl|oryCun1|scaffold_212548 (54541-54789)
               

               
               1-337, gnl|panTro1|chr10 (111423582-111423820)
               

               
               1-337, gnl|rheMac2|chr11 (110843270-110843508)
               

               
               1-337, gnl|rn3|chr12 (43024112-43023896)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	1-337, gnl\|bosTau2\|chr17 (35945625-35945284)
	1-337, gnl\|canFam2\|chr26 (20243150-20242912)
	1-337, gnl\|dasNov1\|scaffold_92715 (2380-2627)
	1-337, gnl\|galGal2\|chr15 (6808436-6808678)
	1-337, gnl\|hg17\|chr12 (108830321-108830557)
	1-337, gnl\|Hg17\|chr12 (108830652-108830327)
	1-337, gnl\|loxAfr1\|scaffold_63310 (5265-5017)
	1-337, gnl\|mm7\|chr5 (113948240-113948457)
	1-337, gnl\|Mm7\|chr5 (113948547-113948244)
	1-337, gnl\|monDom2\|scaffold_192 (389377-389154)
	1-337, gnl\|oryCun1\|scaffold_212548 (54541-54789)
	1-337, gnl\|panTro1\|chr10 (111423582-111423820)
	1-337, gnl\|rheMac2\|chr11 (110843270-110843508)
	1-337, gnl\|rn3\|chr12 (43024112-43023896)