Non-Coding RNA Search

Ss1.1-CorL-UMC-pd12cl-021-h10.3

Sequence:


               
               ATCAAACGCTTGAAAATCTCATCCCCGGTCCGCGTTAGTCAGAACTGCTACTACAATTTG
CAGCACGAGAGGGGTTCAGAAGATGCGCCTCGAAACTGTTGAGGACTCCGACAGCCGGTT
GGAGACCACGGTCTGTAAACCCCCCCCCATCCCCCGCACGGCTCGCGGCTCGGGGGGCAC
CGACCCCGTCTCCGTTTACACAGCTCTTCCCAGCCCGCGTCTGAAGTCTGGGATCCAGAG
GGATCAGTGAACCAGCGGGCGTGCCTGCAGCCCCGGGGCGTCCGGGTGAGCAGCGCGCGC
ACAGCGTGAGCGGGGCCCAGGCGGCGGTCCCGGTTCCTCTGCAGCCGCCGGCGCCCAGAG
GATCCGCTCTGTTAACTGTCCTGCCCGCGCCTCTCATTTCTGTAGAGCTACTCATCCTTA
TTTGGAAAAACCAACGCCTCCCCCCAAAAAAACAAAAAACAAAAAAAAAAAGGCTTTTAG
AAAATGGTTGTAAATCTGACTTCTTTGCAAGTAACTGTGTATATTGTAAATAGGTACAAA
GGCCTTTTTTCTAAATAAGGACTTAACTGCCTGTAACATGAGACTGCAAACTACACCACT
AACTCAATGAACTCCTATGGTTTGTCTGCCATCGCTCACCAATTAATTATAAATATGTTT
TTTTAAATCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAAACGCTTGAAAATCTCATCCCCGGTCCGCGTTAGTCAGAACTGCTACTACAATTTG
CAGCACGAGAGGGGTTCAGAAGATGCGCCTCGAAACTGTTGAGGACTCCGACAGCCGGTT
GGAGACCACGGTCTGTAAACCCCCCCCCATCCCCCGCACGGCTCGCGGCTCGGGGGGCAC
CGACCCCGTCTCCGTTTACACAGCTCTTCCCAGCCCGCGTCTGAAGTCTGGGATCCAGAG
GGATCAGTGAACCAGCGGGCGTGCCTGCAGCCCCGGGGCGTCCGGGTGAGCAGCGCGCGC
ACAGCGTGAGCGGGGCCCAGGCGGCGGTCCCGGTTCCTCTGCAGCCGCCGGCGCCCAGAG
GATCCGCTCTGTTAACTGTCCTGCCCGCGCCTCTCATTTCTGTAGAGCTACTCATCCTTA
TTTGGAAAAACCAACGCCTCCCCCCAAAAAAACAAAAAACAAAAAAAAAAAGGCTTTTAG
AAAATGGTTGTAAATCTGACTTCTTTGCAAGTAACTGTGTATATTGTAAATAGGTACAAA
GGCCTTTTTTCTAAATAAGGACTTAACTGCCTGTAACATGAGACTGCAAACTACACCACT
AACTCAATGAACTCCTATGGTTTGTCTGCCATCGCTCACCAATTAATTATAAATATGTTT
TTTTAAATCCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               442-558, - strand, RNAz p=0.830748

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               442-558, - strand, RNAz p=0.830748

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-672, gnl|bosTau2|chr6 (57991874-57992560)
               

               
               1-672, gnl|Hg17|chr4 (85951301-85950626)
               

               
               1-672, gnl|Mm7|chr5 (101024622-101023966)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr6 (57991874-57992560)
               

               
               1-672, gnl|Hg17|chr4 (85951301-85950626)
               

               
               1-672, gnl|Mm7|chr5 (101024622-101023966)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               kid (0.129735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               kid (0.129735)

	1-672, gnl\|bosTau2\|chr6 (57991874-57992560)
	1-672, gnl\|Hg17\|chr4 (85951301-85950626)
	1-672, gnl\|Mm7\|chr5 (101024622-101023966)