Non-Coding RNA Search

Ss1.1-Emb1-C0005178_O15.5

Sequence:


               
               AGAGGCCGCTTTGTGTGCAGCCCGAAGAGGGGCGGCGGCGCAACCACCTGACAGAGGCCC
GGGCGCTCGATGCACCTTCCGCCCGCATGAGTGAGGAGAGGCCGGTAGAGGACTGTGAAA
GAAAAGTTGTCCCCCAGGATGGACTTCACCTGCGCAGCCCAAGCCTGCCACAGCCCTCTG
TGGCGTCGTGAGTGCCGATGGGAAGATCGCTTACCCTCCGGGGGTAAAGGAGATCACCGA
CAAGATTACCACCGACGAAATGATCAAACGACTGAAGATGGTAGTAAAAACTTTTATGGA
TATGGATCAGGACTCAGAAGATGAAAAACAGCAGTATCTCCCACTAGCCTTGCATCTAGC
GTCTGAATTTTTTCTCAGGAATCCCAATAAAGATGTGCGTCTCCTTGTAGCATGTTGTTT
GGCTGACATCTTTCGAATCTATGCCCCAGAAGCTCCATATACTTCCCATGATAAACTTAA
GGTAAATACAATTTTACGAAATTGGTTTACTTTTATAGTTTAGCTTATCACCCTTAGGAA
CCTAGGTTTCATTTTAATCATTTCGTCATAAAATGAAGTAATTATTCGTTCAGTTAGTAT
TCCTTCGGGTATCCACCAAAATGACTGGTATTTTAAAAAGACATTAAAAGGTACAGATCA
AAATTAGTCCTTATCCACTCATATCTAACCTTCAGGATAACCCATCTCAAAGCCCAAATG
GCTAAATTGAAGGGATGGTGGATGAATTTTTTTTAAACAACTGTATAACAGAGTTTACAC
ATTCAGATGACTATTTCCCCTACAAGATATTTTACCTTCCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGCCGCTTTGTGTGCAGCCCGAAGAGGGGCGGCGGCGCAACCACCTGACAGAGGCCC
GGGCGCTCGATGCACCTTCCGCCCGCATGAGTGAGGAGAGGCCGGTAGAGGACTGTGAAA
GAAAAGTTGTCCCCCAGGATGGACTTCACCTGCGCAGCCCAAGCCTGCCACAGCCCTCTG
TGGCGTCGTGAGTGCCGATGGGAAGATCGCTTACCCTCCGGGGGTAAAGGAGATCACCGA
CAAGATTACCACCGACGAAATGATCAAACGACTGAAGATGGTAGTAAAAACTTTTATGGA
TATGGATCAGGACTCAGAAGATGAAAAACAGCAGTATCTCCCACTAGCCTTGCATCTAGC
GTCTGAATTTTTTCTCAGGAATCCCAATAAAGATGTGCGTCTCCTTGTAGCATGTTGTTT
GGCTGACATCTTTCGAATCTATGCCCCAGAAGCTCCATATACTTCCCATGATAAACTTAA
GGTAAATACAATTTTACGAAATTGGTTTACTTTTATAGTTTAGCTTATCACCCTTAGGAA
CCTAGGTTTCATTTTAATCATTTCGTCATAAAATGAAGTAATTATTCGTTCAGTTAGTAT
TCCTTCGGGTATCCACCAAAATGACTGGTATTTTAAAAAGACATTAAAAGGTACAGATCA
AAATTAGTCCTTATCCACTCATATCTAACCTTCAGGATAACCCATCTCAAAGCCCAAATG
GCTAAATTGAAGGGATGGTGGATGAATTTTTTTTAAACAACTGTATAACAGAGTTTACAC
ATTCAGATGACTATTTCCCCTACAAGATATTTTACCTTCCAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|51827466|ref|XP_485617.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|51827466|ref|XP_485617.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               273-578, gnl|bosTau2|chrX (41669005-41668699)
               

               
               273-578, gnl|Hg17|chr4 (39752355-39752025)
               

               
               273-578, gnl|Mm7|chr5 (65021127-65020857)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               273-578, gnl|bosTau2|chrX (41669005-41668699)
               

               
               273-578, gnl|Hg17|chr4 (39752355-39752025)
               

               
               273-578, gnl|Mm7|chr5 (65021127-65020857)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ski (0.146735)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)
               

               
               spl (0.143184)

	273-578, gnl\|bosTau2\|chrX (41669005-41668699)
	273-578, gnl\|Hg17\|chr4 (39752355-39752025)
	273-578, gnl\|Mm7\|chr5 (65021127-65020857)