Non-Coding RNA Search

Ss1.1-Emb1-C0005179_L05.5

Sequence:


               
               TTTTTAAGGGGGTAAAGCCTGCATAAAAGCAGTTATCTTGGCATGTGCAAACAAGAAGAG
AGAAAGCTGTACTGAAGGAAGGGGTGAATTAAAGTCCCTAAAATTCAAGTCCCTTCTTTA
GGGAGGTGAGAACCTCCTTGGCATATGCCCTGCCTTAATCTGAGCTGTGTTATAGAAAAG
TACAGACTCTGGTGTTTGGGACTGCCATCTCCAAACCAAGAAAATTAAATAAATAAAAAA
GGCAAAAGGAAACAGGTTATGTTTAGAAAATGGTTCTTTAACTAGTGGAATAGTCTGAAT
ACCAGAATTCACTGAGAATCTATTTACACCACAGTTTGATTGCACACACACACCCATACA
TATGCATACTCTCACACACATTCCCAATCTTTAATTTAAAAAAAAAAAAAAAAGTCAAAC
AATCAAGAGTTTCTGCTCTTAAAATAATTTGTAAAATGCCTAGAGCTGGGCTAAATTTCA
ACCTTATAGCAGATCCTGAAGATAATTTTCATAATTAATAATATTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTAAGGGGGTAAAGCCTGCATAAAAGCAGTTATCTTGGCATGTGCAAACAAGAAGAG
AGAAAGCTGTACTGAAGGAAGGGGTGAATTAAAGTCCCTAAAATTCAAGTCCCTTCTTTA
GGGAGGTGAGAACCTCCTTGGCATATGCCCTGCCTTAATCTGAGCTGTGTTATAGAAAAG
TACAGACTCTGGTGTTTGGGACTGCCATCTCCAAACCAAGAAAATTAAATAAATAAAAAA
GGCAAAAGGAAACAGGTTATGTTTAGAAAATGGTTCTTTAACTAGTGGAATAGTCTGAAT
ACCAGAATTCACTGAGAATCTATTTACACCACAGTTTGATTGCACACACACACCCATACA
TATGCATACTCTCACACACATTCCCAATCTTTAATTTAAAAAAAAAAAAAAAAGTCAAAC
AATCAAGAGTTTCTGCTCTTAAAATAATTTGTAAAATGCCTAGAGCTGGGCTAAATTTCA
ACCTTATAGCAGATCCTGAAGATAATTTTCATAATTAATAATATTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-239, + strand, RNAz p=0.986236

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-239, + strand, RNAz p=0.986236

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               1-239, DKFZp469E0274_r1 469 (synonym (emb|CR856879.1|), blast E-value=0, 
identity=96.23% 
               

               
               1-239, LeukoN5_6_A05.g1_A027 Unstimulated peripheral blood leukocytes N5 
(gb|CD535619.1|), blast E-value=0, identity=96.68% 
               

               
               1-239, 4129188 BARC 8BOV Bos taurus cDNA clone 8BOV_49N22 5', mRNA 
(gb|CN794070.1|), blast E-value=0, identity=96.23% 
               

               
               1-239, LB01110.CR.1_I02 GC_BGC-11 Bos taurus cDNA clone IMAGE (gb|DV835957.1|), 
blast E-value=0, identity=96.23% 
               

               
               1-239, LB02226.CR_E20 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE242353.1|), 
blast E-value=0, identity=96.23% 
               

               
               1-239, LB0323.CR.1_C09 GC_BGC-32 Bos taurus cDNA clone IMAGE (gb|EE253053.1|), 
blast E-value=0, identity=96.23%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-239, DKFZp469E0274_r1 469 (synonym (emb|CR856879.1|), blast E-value=0, 
identity=96.23% 
               

               
               1-239, LeukoN5_6_A05.g1_A027 Unstimulated peripheral blood leukocytes N5 
(gb|CD535619.1|), blast E-value=0, identity=96.68% 
               

               
               1-239, 4129188 BARC 8BOV Bos taurus cDNA clone 8BOV_49N22 5', mRNA 
(gb|CN794070.1|), blast E-value=0, identity=96.23% 
               

               
               1-239, LB01110.CR.1_I02 GC_BGC-11 Bos taurus cDNA clone IMAGE (gb|DV835957.1|), 
blast E-value=0, identity=96.23% 
               

               
               1-239, LB02226.CR_E20 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE242353.1|), 
blast E-value=0, identity=96.23% 
               

               
               1-239, LB0323.CR.1_C09 GC_BGC-32 Bos taurus cDNA clone IMAGE (gb|EE253053.1|), 
blast E-value=0, identity=96.23%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-528, gnl|bosTau2|chr19 (5455106-5454587)
               

               
               1-528, gnl|Hg17|chr17 (57377030-57377544)
               

               
               1-528, gnl|Mm7|chr11 (86339255-86339845)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr19 (5455106-5454587)
               

               
               1-528, gnl|Hg17|chr17 (57377030-57377544)
               

               
               1-528, gnl|Mm7|chr11 (86339255-86339845)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-239, DKFZp469E0274_r1 469 (synonym (emb\|CR856879.1\|), blast E-value=0, identity=96.23%
	1-239, LeukoN5_6_A05.g1_A027 Unstimulated peripheral blood leukocytes N5 (gb\|CD535619.1\|), blast E-value=0, identity=96.68%
	1-239, 4129188 BARC 8BOV Bos taurus cDNA clone 8BOV_49N22 5', mRNA (gb\|CN794070.1\|), blast E-value=0, identity=96.23%
	1-239, LB01110.CR.1_I02 GC_BGC-11 Bos taurus cDNA clone IMAGE (gb\|DV835957.1\|), blast E-value=0, identity=96.23%
	1-239, LB02226.CR_E20 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb\|EE242353.1\|), blast E-value=0, identity=96.23%
	1-239, LB0323.CR.1_C09 GC_BGC-32 Bos taurus cDNA clone IMAGE (gb\|EE253053.1\|), blast E-value=0, identity=96.23%

	1-528, gnl\|bosTau2\|chr19 (5455106-5454587)
	1-528, gnl\|Hg17\|chr17 (57377030-57377544)
	1-528, gnl\|Mm7\|chr11 (86339255-86339845)