Non-Coding RNA Search

Ss1.1-Emb1-C0005180_O24.5

Sequence:


               
               TTTTACCTGGCTTCCTCCATCCCCAGAGGCTTTAAAAGTAGTAGTTTATGGACAGTGATT
TACTCCCTAGAAGCCTGATATGGGTGGATTAGCAGTAAGGCTTGGGTAAAGCTGAGGGAC
AGAGGTCCTTATTTGTCTTTTTGTTTTTCTTTTTTTCTTTTGTTTTTCTTTTTTTTTTTT
TTAAATCATATGACCACAGCATCTGGACTTTCTTCATCCCTGGAATAAGTATATTTTCCA
CATTTTTTGGATGTATGTATGGTAGACAATTTTTTTTAAGACACGGAGATAAATGTTTTC
CTGCTTTGGTTACCTTTCCTTTTCCCTTTAAAAGGAATTAGCTATAGAACTGCTTTGTAA
AGATGCTTCTTGATATTTTACTTTTGTTCCTTTTCCCCAACCCACTCCCTTTTCTCCCCA
CTCCTCCAGAAGGCATAACCTTCTCTCCACACCCCCTCCCATCCCTACCCCAGTTCTAGG
CTCCCTTCCCCTCCAACAAGACCTTCATTAGCTTATGATATTTGCTGCCGAGATGTTATA
ACAAGGACTCATTCGTGTATATAAGCTATTTCTTGAACCATTTAAAAGGAATTGTACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTACCTGGCTTCCTCCATCCCCAGAGGCTTTAAAAGTAGTAGTTTATGGACAGTGATT
TACTCCCTAGAAGCCTGATATGGGTGGATTAGCAGTAAGGCTTGGGTAAAGCTGAGGGAC
AGAGGTCCTTATTTGTCTTTTTGTTTTTCTTTTTTTCTTTTGTTTTTCTTTTTTTTTTTT
TTAAATCATATGACCACAGCATCTGGACTTTCTTCATCCCTGGAATAAGTATATTTTCCA
CATTTTTTGGATGTATGTATGGTAGACAATTTTTTTTAAGACACGGAGATAAATGTTTTC
CTGCTTTGGTTACCTTTCCTTTTCCCTTTAAAAGGAATTAGCTATAGAACTGCTTTGTAA
AGATGCTTCTTGATATTTTACTTTTGTTCCTTTTCCCCAACCCACTCCCTTTTCTCCCCA
CTCCTCCAGAAGGCATAACCTTCTCTCCACACCCCCTCCCATCCCTACCCCAGTTCTAGG
CTCCCTTCCCCTCCAACAAGACCTTCATTAGCTTATGATATTTGCTGCCGAGATGTTATA
ACAAGGACTCATTCGTGTATATAAGCTATTTCTTGAACCATTTAAAAGGAATTGTACATT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-161, gnl|bosTau2|chr3 (8029461-8029302)
               

               
               1-161, gnl|canFam2|chr7 (46270352-46270004)
               

               
               1-161, gnl|dasNov1|scaffold_61018 (132-427)
               

               
               1-161, gnl|echTel1|scaffold_310951 (40955-40633)
               

               
               1-161, gnl|hg17|chr1 (150592419-150592733)
               

               
               1-161, gnl|Hg17|chr1 (150592742-150592595)
               

               
               1-161, gnl|loxAfr1|scaffold_2219 (134961-135287)
               

               
               1-161, gnl|mm7|chr3 (90492075-90491762)
               

               
               1-161, gnl|Mm7|chr3 (90491751-90491898)
               

               
               1-161, gnl|monDom2|scaffold_59 (4262958-4262535)
               

               
               1-161, gnl|panTro1|chr1 (132572255-132572568)
               

               
               1-161, gnl|rn3|chr2 (182568791-182568478)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-161, gnl|bosTau2|chr3 (8029461-8029302)
               

               
               1-161, gnl|canFam2|chr7 (46270352-46270004)
               

               
               1-161, gnl|dasNov1|scaffold_61018 (132-427)
               

               
               1-161, gnl|echTel1|scaffold_310951 (40955-40633)
               

               
               1-161, gnl|hg17|chr1 (150592419-150592733)
               

               
               1-161, gnl|Hg17|chr1 (150592742-150592595)
               

               
               1-161, gnl|loxAfr1|scaffold_2219 (134961-135287)
               

               
               1-161, gnl|mm7|chr3 (90492075-90491762)
               

               
               1-161, gnl|Mm7|chr3 (90491751-90491898)
               

               
               1-161, gnl|monDom2|scaffold_59 (4262958-4262535)
               

               
               1-161, gnl|panTro1|chr1 (132572255-132572568)
               

               
               1-161, gnl|rn3|chr2 (182568791-182568478)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               rec (0.17307)
               

               
               liv (0.146284)
               

               
               nca (0.136874)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               nca (0.136874)

	1-161, gnl\|bosTau2\|chr3 (8029461-8029302)
	1-161, gnl\|canFam2\|chr7 (46270352-46270004)
	1-161, gnl\|dasNov1\|scaffold_61018 (132-427)
	1-161, gnl\|echTel1\|scaffold_310951 (40955-40633)
	1-161, gnl\|hg17\|chr1 (150592419-150592733)
	1-161, gnl\|Hg17\|chr1 (150592742-150592595)
	1-161, gnl\|loxAfr1\|scaffold_2219 (134961-135287)
	1-161, gnl\|mm7\|chr3 (90492075-90491762)
	1-161, gnl\|Mm7\|chr3 (90491751-90491898)
	1-161, gnl\|monDom2\|scaffold_59 (4262958-4262535)
	1-161, gnl\|panTro1\|chr1 (132572255-132572568)
	1-161, gnl\|rn3\|chr2 (182568791-182568478)