Non-Coding RNA Search

Ss1.1-Emb1-C0005181_B10.5

Sequence:


               
               GACACAAGAGGGATTTGACCCCTTGGCCTCCCAAAACTTTTTGTTTTATGTACTTAACTT
TAAAATGTGAGTTTGAGTTCTCTTTTGTGGAAACTTAAGATGTGGTGTAAATGATTCTTT
CCAAAATTGTCCAGCAGCTTTAATGAGGCAGTGACAATTCCTAATTAGTTTATCGGGAGT
CCTTTTACATTTCTCCGTAGATAACTTGCAATCTGGGTGGCTATTGTATAGCCTTACTGT
CCCAGAGAGCCTGGTTAGCCATTTCCCCTCTGATAGGAATATTTTATAAGACTCAGCTGA
TAACTTGGAGTTTAGGGCCTCGTTACCTGGGCCCCTGGGAAACACATTTTCTTGGTTTTT
GAAAACCTGAAACACAAGCAACTTTCCACTTAGGGGAATTCGCTGATACCTCCTGAGACC
CGAGGAGGTGGTGGGGAATATGAGCGGTGCTGTCTCTTTAAAAGTGCCCTTTATATGATT
CCCCCTCCTGGGGCTGCCTGCAGGGGGCTGTAGGCTTGGGAGAGGTTGTGTAGGTGACAG
TGAATCAGAATGAAGTGGTAGATTTTGTGTAGATGCATTTGTCTGCTGTAATTTTTTATA
TATATTAAACTTACTGTAACTGTACAGTTCATCTCTGTTGTAAAACATCATTAAACCATT
TTCCAAGTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACAAGAGGGATTTGACCCCTTGGCCTCCCAAAACTTTTTGTTTTATGTACTTAACTT
TAAAATGTGAGTTTGAGTTCTCTTTTGTGGAAACTTAAGATGTGGTGTAAATGATTCTTT
CCAAAATTGTCCAGCAGCTTTAATGAGGCAGTGACAATTCCTAATTAGTTTATCGGGAGT
CCTTTTACATTTCTCCGTAGATAACTTGCAATCTGGGTGGCTATTGTATAGCCTTACTGT
CCCAGAGAGCCTGGTTAGCCATTTCCCCTCTGATAGGAATATTTTATAAGACTCAGCTGA
TAACTTGGAGTTTAGGGCCTCGTTACCTGGGCCCCTGGGAAACACATTTTCTTGGTTTTT
GAAAACCTGAAACACAAGCAACTTTCCACTTAGGGGAATTCGCTGATACCTCCTGAGACC
CGAGGAGGTGGTGGGGAATATGAGCGGTGCTGTCTCTTTAAAAGTGCCCTTTATATGATT
CCCCCTCCTGGGGCTGCCTGCAGGGGGCTGTAGGCTTGGGAGAGGTTGTGTAGGTGACAG
TGAATCAGAATGAAGTGGTAGATTTTGTGTAGATGCATTTGTCTGCTGTAATTTTTTATA
TATATTAAACTTACTGTAACTGTACAGTTCATCTCTGTTGTAAAACATCATTAAACCATT
TTCCAAGTGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-269, - strand, RNAz p=0.663075

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-269, - strand, RNAz p=0.663075

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-672, gnl|bosTau2|chr3 (110074-110741)
               

               
               4-672, gnl|Hg17|chr1 (164127566-164128232)
               

               
               4-672, gnl|Mm7|chr1 (165836525-165835865)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-672, gnl|bosTau2|chr3 (110074-110741)
               

               
               4-672, gnl|Hg17|chr1 (164127566-164128232)
               

               
               4-672, gnl|Mm7|chr1 (165836525-165835865)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	4-672, gnl\|bosTau2\|chr3 (110074-110741)
	4-672, gnl\|Hg17\|chr1 (164127566-164128232)
	4-672, gnl\|Mm7\|chr1 (165836525-165835865)