Non-Coding RNA Search

Ss1.1-Emb1-C0005181_E17.5

Sequence:


               
               CTGAACCAATATGATATGTCAAATGCGTGATTAAGAAATTAGAGGAGGGGTCCCATTGTG
TCTTAGTGGGTTACAAACCCGACTAGTATCCATGAGGATGCGGGTTTGCTCCCTGGCCTT
CCTCAGTGGGTTGAGGATCCAGCGTTGCCATGAACTGTGATGTAGGTTATAGACTCGGCT
CGGATCCTGAATCGGCTGTGGCTGTGGCATAGGCCAACAGGTGCAGTTCCAATTCAACTC
CTAGTCTGAGAACCTCTATATGCCACAGGTGAGTCCCTAAAAAGAAAAAAAGAAATTTGA
GGGGGAAGCTAGAACTCTACTAATTTGTGGAGGTATTTGTGGTATGTTGTTAAGTGAAAA
GAAAATGTCAGAGTAATGTATATGAACCTATTTTTTTAATTAAAACACCTATATATGTAT
ATATGCATGTGTATGTTTATAAGAACAAACAGAAAAGCTTGGAAGGATATAAAACAAGGT
GTTAATTAACATTGGTTACCCTGGTGGGAATGGAAATTAATTTAGTTGTTTAATGTATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAACCAATATGATATGTCAAATGCGTGATTAAGAAATTAGAGGAGGGGTCCCATTGTG
TCTTAGTGGGTTACAAACCCGACTAGTATCCATGAGGATGCGGGTTTGCTCCCTGGCCTT
CCTCAGTGGGTTGAGGATCCAGCGTTGCCATGAACTGTGATGTAGGTTATAGACTCGGCT
CGGATCCTGAATCGGCTGTGGCTGTGGCATAGGCCAACAGGTGCAGTTCCAATTCAACTC
CTAGTCTGAGAACCTCTATATGCCACAGGTGAGTCCCTAAAAAGAAAAAAAGAAATTTGA
GGGGGAAGCTAGAACTCTACTAATTTGTGGAGGTATTTGTGGTATGTTGTTAAGTGAAAA
GAAAATGTCAGAGTAATGTATATGAACCTATTTTTTTAATTAAAACACCTATATATGTAT
ATATGCATGTGTATGTTTATAAGAACAAACAGAAAAGCTTGGAAGGATATAAAACAAGGT
GTTAATTAACATTGGTTACCCTGGTGGGAATGGAAATTAATTTAGTTGTTTAATGTATAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               399-513, - strand, RNAz p=0.939178

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-513, - strand, RNAz p=0.939178

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               290-540, gnl|bosTau2|chr18 (42832322-42832565)
               

               
               290-540, gnl|Hg17|chr19 (42725746-42725995)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               290-540, gnl|bosTau2|chr18 (42832322-42832565)
               

               
               290-540, gnl|Hg17|chr19 (42725746-42725995)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	290-540, gnl\|bosTau2\|chr18 (42832322-42832565)
	290-540, gnl\|Hg17\|chr19 (42725746-42725995)