Non-Coding RNA Search

Ss1.1-Emb1-C0005181_E18.5

Sequence:


               
               ATGGTTTCTGTATTTTTTTTTAATTTTTTTAATTTATTTTTTTTCTAT------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------CGGTAACTCCAGTTTTTCTCTTTTTAAATGTTTGTA
AAACAAGAAACTAGAGGAAAAGAAGATGAATACGACAGAGACCATATTTTTTTTTCTTTT
TTTTTTTTTTTTAAACAAAGCCTACGATGTTTATTTGGCTCACGTTGGCCCTGGCTTAGA
CGGGGCTCTCCGAGGTGAAGGACTGCGTTTAGTTGTTTGTCTTCTGCAGTCCCTCAGGCC
CTGATGTCCATGCGCTGTCCAGAGCGGTGAGTCCCCTGACTCGGTGGCAGTGTCACATTG
CTGTGTTTCTAAATGCTTGTTCTTTTTTTGTGCTTAATTCATTGCCGATAAGTAACAAGC
AGCTCGTAATCTCATACTGGTCTGTGGACCACACTTTCAGTAGCAGTGGCCTGAAAATTA
CCCAGTACAGAGTGGCTGCCCAGGACACATCTGTCCATGCGACGATGGCTTGTGGTAGTC
TGAGATAGTTCCTGTACAGGGTGTCTGAGCCAGAGTGGATACCTTGGTCTGAAAGCCACC
TTCGAAATGATAGTGCTACAAAATTAAGTGTCAGAAATATCTCCTTTCTACCCAGAGCCT
TTGTTGGAGGCATGAAAACAGTGTGAAAGCTGTGCTTGGCTCTGGACTATTGATCACTTT
TCCCTAATATTTGTATAGGGCTTTATTTAAGGTTCGCAGTTCTTCCATAAGAATTCAAAT
CCGGAAAATCTGTTTCTCTCCTTCTTTCCTGTCTCCTTCCGTTTTTTTTCAACCTTAAAT
AAAATCCCAAAGTTTTTCAAATAAGGGGCCTGGAAACAGATGTTGGCCAGGTGGAAATTG
TTTTGAGTGCAGCTATGAGATGCTCAGCTTTCAGTCATAGAAATCAACTTAAGTAAATTA
GTGAGCATAAACTGATCTTTCTGATGACTTTTTAAAAACTGCTTTTTTCAAATTGCCTTC
AACCAGTTAATTTATAATTTCCCCGAGGACTTCAGTAGACATTCTGTGTATAATCAGATC
TGTTTTTATCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGTTTCTGTATTTTTTTTTAATTTTTTTAATTTATTTTTTTTCTAT------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------CGGTAACTCCAGTTTTTCTCTTTTTAAATGTTTGTA
AAACAAGAAACTAGAGGAAAAGAAGATGAATACGACAGAGACCATATTTTTTTTTCTTTT
TTTTTTTTTTTTAAACAAAGCCTACGATGTTTATTTGGCTCACGTTGGCCCTGGCTTAGA
CGGGGCTCTCCGAGGTGAAGGACTGCGTTTAGTTGTTTGTCTTCTGCAGTCCCTCAGGCC
CTGATGTCCATGCGCTGTCCAGAGCGGTGAGTCCCCTGACTCGGTGGCAGTGTCACATTG
CTGTGTTTCTAAATGCTTGTTCTTTTTTTGTGCTTAATTCATTGCCGATAAGTAACAAGC
AGCTCGTAATCTCATACTGGTCTGTGGACCACACTTTCAGTAGCAGTGGCCTGAAAATTA
CCCAGTACAGAGTGGCTGCCCAGGACACATCTGTCCATGCGACGATGGCTTGTGGTAGTC
TGAGATAGTTCCTGTACAGGGTGTCTGAGCCAGAGTGGATACCTTGGTCTGAAAGCCACC
TTCGAAATGATAGTGCTACAAAATTAAGTGTCAGAAATATCTCCTTTCTACCCAGAGCCT
TTGTTGGAGGCATGAAAACAGTGTGAAAGCTGTGCTTGGCTCTGGACTATTGATCACTTT
TCCCTAATATTTGTATAGGGCTTTATTTAAGGTTCGCAGTTCTTCCATAAGAATTCAAAT
CCGGAAAATCTGTTTCTCTCCTTCTTTCCTGTCTCCTTCCGTTTTTTTTCAACCTTAAAT
AAAATCCCAAAGTTTTTCAAATAAGGGGCCTGGAAACAGATGTTGGCCAGGTGGAAATTG
TTTTGAGTGCAGCTATGAGATGCTCAGCTTTCAGTCATAGAAATCAACTTAAGTAAATTA
GTGAGCATAAACTGATCTTTCTGATGACTTTTTAAAAACTGCTTTTTTCAAATTGCCTTC
AACCAGTTAATTTATAATTTCCCCGAGGACTTCAGTAGACATTCTGTGTATAATCAGATC
TGTTTTTATCAC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               270-630, gnl|bosTau2|chr6 (60986297-60986675)
               

               
               270-630, gnl|Hg17|chr4 (4573852-4573462)
               


               
               664-1056, gnl|bosTau2|chr6 (60987005-60987409)
               

               
               664-1056, gnl|Hg17|chr4 (4571185-4570790)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               270-630, gnl|bosTau2|chr6 (60986297-60986675)
               

               
               270-630, gnl|Hg17|chr4 (4573852-4573462)
               


               
               664-1056, gnl|bosTau2|chr6 (60987005-60987409)
               

               
               664-1056, gnl|Hg17|chr4 (4571185-4570790)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	270-630, gnl\|bosTau2\|chr6 (60986297-60986675)
	270-630, gnl\|Hg17\|chr4 (4573852-4573462)

	664-1056, gnl\|bosTau2\|chr6 (60987005-60987409)
	664-1056, gnl\|Hg17\|chr4 (4571185-4570790)