Non-Coding RNA Search

Ss1.1-Emb1-C0005182_D11.5

Sequence:


               
               TTTTTTTTTTCAAATCTCCACAATGTGGGTTGGTGCTAGACTTCATTCAGTCACAGCACC
TAACGGACCCAGAGAACAGGAGTTATTTCCTCCATCCTCCAAAAAGAAACTCAAGAAGAA
AACACACACATGGAGAAGTTTAATAAATCTAGGAAGTTTTTTTCAATTAAAAACTATTTA
AAGAGATGAATGTGTGGCCAAAGTTTTACACAATTGAAAATAAAGTAAAACAGACGGCAT
GTGTTTAAACCTGAGTTTATCAGGCATGGCAGGAAGTTGCAAGAGAGAGGCAGTGACCCA
AGCCAGTGCACTTGATGTTCATGGACATATATTTTTTTTAAATAATAAATTAAATTAAAA
CATTTTAAATAGAAGCATAAATTGAGTTGGTTGTTTGTTGGCGCTGAGATACTGCCCACT
GTGAAACAAAGCTTTGACTAGTTTTTTTGTTTGTTTGTTTACTTTTTTCGGGGGGAGGGG
GGCAAGTTTGGGTAGGAAAGAAAGCATACATGAACGTGACCCTGAGGTGAAGAGGTATAT
GAACAGCCTTTGCAATGTACAAAAAAACAAAAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTCAAATCTCCACAATGTGGGTTGGTGCTAGACTTCATTCAGTCACAGCACC
TAACGGACCCAGAGAACAGGAGTTATTTCCTCCATCCTCCAAAAAGAAACTCAAGAAGAA
AACACACACATGGAGAAGTTTAATAAATCTAGGAAGTTTTTTTCAATTAAAAACTATTTA
AAGAGATGAATGTGTGGCCAAAGTTTTACACAATTGAAAATAAAGTAAAACAGACGGCAT
GTGTTTAAACCTGAGTTTATCAGGCATGGCAGGAAGTTGCAAGAGAGAGGCAGTGACCCA
AGCCAGTGCACTTGATGTTCATGGACATATATTTTTTTTAAATAATAAATTAAATTAAAA
CATTTTAAATAGAAGCATAAATTGAGTTGGTTGTTTGTTGGCGCTGAGATACTGCCCACT
GTGAAACAAAGCTTTGACTAGTTTTTTTGTTTGTTTGTTTACTTTTTTCGGGGGGAGGGG
GGCAAGTTTGGGTAGGAAAGAAAGCATACATGAACGTGACCCTGAGGTGAAGAGGTATAT
GAACAGCCTTTGCAATGTACAAAAAAACAAAAAACA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-102, - strand, RNAz p=0.964002
               

               
               160-306, + strand, RNAz p=0.985999

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-102, - strand, RNAz p=0.964002
               

               
               160-306, + strand, RNAz p=0.985999

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               14-95, - strand, RNAmicro p=0.98754
               

               
               22-90, + strand, RNAmicro p=0.956214

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               14-95, - strand, RNAmicro p=0.98754
               

               
               22-90, + strand, RNAmicro p=0.956214

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-576, gnl|bosTau2|chr18 (33595048-33595619)
               

               
               4-576, gnl|Hg17|chr16 (71375130-71374590)
               

               
               4-576, gnl|Mm7|chr8 (107560780-107561412)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-576, gnl|bosTau2|chr18 (33595048-33595619)
               

               
               4-576, gnl|Hg17|chr16 (71375130-71374590)
               

               
               4-576, gnl|Mm7|chr8 (107560780-107561412)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	4-102, - strand, RNAz p=0.964002
	160-306, + strand, RNAz p=0.985999

	14-95, - strand, RNAmicro p=0.98754
	22-90, + strand, RNAmicro p=0.956214

	4-576, gnl\|bosTau2\|chr18 (33595048-33595619)
	4-576, gnl\|Hg17\|chr16 (71375130-71374590)
	4-576, gnl\|Mm7\|chr8 (107560780-107561412)